Sequence 1: | NP_511124.1 | Gene: | RpII215 / 32100 | FlyBaseID: | FBgn0003277 | Length: | 1887 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_033114.3 | Gene: | Polr1a / 20019 | MGIID: | 1096397 | Length: | 1717 | Species: | Mus musculus |
Alignment Length: | 1789 | Identity: | 464/1789 - (25%) |
---|---|---|---|
Similarity: | 746/1789 - (41%) | Gaps: | 417/1789 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 PLRQVKRVQFGILSPDEIRRMSVTE-GGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAGN 73
Fly 74 MTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSRGQPRKRLA 138
Fly 139 YVYDLCK--GKTICEGGEDMDLTKENQQPDPNKKPGH----GGCGHYQPSIRRTGLDLTAE-WK- 195
Fly 196 ---------------------------------HQNEDSQ-------------------EKKIVV 208
Fly 209 SAERVWEILKHITDEECFIL-----GMD---PKYA-RPDWMIVTVLPVPPLAVRPA--------- 255
Fly 256 ---VVMFGAAKNQDDLTHKLSDIIKANNEL----------RKNEAS------------GAAAHVI 295
Fly 296 QENIKM-LQFHVATLVDNDM--------PGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 351
Fly 352 DFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG 416
Fly 417 ERIDLRF-------------------HPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMM 462
Fly 463 GHRVKVLP-WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPV 526
Fly 527 MGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWD----AKMPQPCILKPRPLWTGKQIFSLI 587
Fly 588 IPGNVNMIRTHSTHPDEEDEGPYK-----------WI-------------SPGDTKVMVEHGELI 628
Fly 629 MGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWL-LFEGHSIGIGDTIADPQTYN 692
Fly 693 EIQ-----------QAIKKAK--------DDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILN 738
Fly 739 DARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 803
Fly 804 KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYD 868
Fly 869 GTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSN-ERLMKKVFTDDVIK 932
Fly 933 EMTDSSEAIQELEA--EWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTD 995
Fly 996 LSPIRVIKGVKTLLERCVIVTGNDRISKQAN----ENATLLFQCLIRSTLCTKYVSEEFRLSTEA 1056
Fly 1057 F--EW-----------------LVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102
Fly 1103 GVSSKNVTLGVPRLKEIINI-SKKPKAP--SLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTAN 1164
Fly 1165 TAIYYDPDPQRTVISED-----------------QEFVNVYYEM-----PD----FDPTRISPWL 1203
Fly 1204 LRI------------ELDRKRMTDKKLT-------MEQIAEKINVGFGEDLNCIFNDDNADKLVL 1249
Fly 1250 RIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS------ 1308
Fly 1309 -----------KKRI-------------------------------------------------- 1312
Fly 1313 ----------VITETGEFKAIGEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAV 1366
Fly 1367 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1431
Fly 1432 MDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDL 1465 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII215 | NP_511124.1 | PRK08566 | 14..887 | CDD:236292 | 294/1053 (28%) |
RNAP_II_RPB1_N | 15..868 | CDD:259848 | 283/1033 (27%) | ||
RNA_pol_Rpb1_5 | 822..1420 | CDD:282807 | 190/749 (25%) | ||
RNA_pol_Rpb1_6 | 890..1071 | CDD:282801 | 33/206 (16%) | ||
RNAP_II_Rpb1_C | 1050..1468 | CDD:132720 | 138/561 (25%) | ||
TCRP1 | 1602..1880 | CDD:291605 | |||
RCR | <1789..1864 | CDD:304939 | |||
Polr1a | NP_033114.3 | RNA_pol_rpoA1 | 10..1038 | CDD:274106 | 299/1071 (28%) |
RNAP_I_RPA1_N | 16..1011 | CDD:259844 | 283/1030 (27%) | ||
RNA_pol_Rpb1_5 | 965..1668 | CDD:282807 | 191/750 (25%) | ||
Bridging helix. /evidence=ECO:0000250 | 968..980 | 7/11 (64%) | |||
RNAP_I_Rpa1_C | 1206..1713 | CDD:132722 | 133/525 (25%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1372..1493 | 21/123 (17%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D591636at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |