DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII215 and polr3a

DIOPT Version :9

Sequence 1:NP_511124.1 Gene:RpII215 / 32100 FlyBaseID:FBgn0003277 Length:1887 Species:Drosophila melanogaster
Sequence 2:NP_001096178.1 Gene:polr3a / 100124725 XenbaseID:XB-GENE-1012749 Length:1390 Species:Xenopus tropicalis


Alignment Length:1557 Identity:512/1557 - (32%)
Similarity:778/1557 - (49%) Gaps:298/1557 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 RQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLG-GLMDPRQGVIDRTSRCQTCAGNMT 75
            :::..:.||:.|.:::|:.:..:...:...:.:.....|. |::|.|.|..::...||||..|:.
 Frog    12 KKISHICFGVKSAEQMRQQAHIQIVSKSLYSQDNNHTPLAFGVLDHRMGTSEKDRHCQTCGKNLA 76

  Fly    76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPK-----IKE---IVMKSRGQ 132
            ||.||:|::||..|.||:|:....|.||:.:|..||::|::....|     :|.   ..::.||.
 Frog    77 ECLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSRILLNAEERKQFLDFLKRPGLTYLQKRGL 141

  Fly   133 PRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRTGLDLTAEWKHQ 197
            .:|    :.|.|:.||:|.                       .||.|..|:::.||......|::
 Frog   142 KKK----ISDKCRKKTVCL-----------------------YCGAYNGSVKKCGLLKIIHEKYK 179

  Fly   198 N--------------------EDSQEKKIVVSAER-------VWEILKHITDEECFILGMDPKYA 235
            .                    |.::|.:.::...:       |..:|:.|..|:..:|.|:|:..
 Frog   180 TTKKVVDPMVSHFLQSFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAG 244

  Fly   236 RPDWMIVTVLPVPPLAVRPAVVM-FGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENI 299
            :|..:|:|.|.||||.:||:||. ..:..|:||||.||::||..|:.::|:..:||...:|.|:.
 Frog   245 KPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDW 309

  Fly   300 KMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
            ..||...|..:::::.|:|..|... |..:....|||||:||.||||.|||||||.||||:||||
 Frog   310 DFLQLQCALYINSELSGIPMNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPN 373

  Fly   365 LRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVR-----------DNGER 418
            ||||:|.||..:|:.|||||.|...|:..|::||:.|...:|||.:|.:           .|.|:
 Frog   374 LRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQQRHTQMKRFLKYGNREK 438

  Fly   419 I--DLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT 481
            |  :|||           |..|||||.|.|:|:|||||:|||:|:|.|..:|.|..|||.|....
 Frog   439 IAQELRF-----------GDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVC 492

  Fly   482 SPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVF 546
            :||||||||||||||:||:.|.:||...:..|...::||:..:|::..:||.|||...:|.:|.|
 Frog   493 TPYNADFDGDEMNLHLPQTEEAKAEAYVLMGTKANLVTPRNGEPLIAAIQDFLTAAYLLTLKDTF 557

  Fly   547 ITREQVMNLL-MFLPTWDAK----MPQPCILKPRPLWTGKQIFSLII-PGNVNMIRTHSTHPDEE 605
            ..|.:...:: ..|...|.|    :|.|.||||..||||||:||||: |.:.|.:|.:.....::
 Frog   558 FDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQPSHDNPVRANLRTKGKQ 622

  Fly   606 DEGPYKWISPGDTKVMVEHGELIMGILCKKSLGT-SAGSLLHICFLELGHDIAGRFYGNIQTVIN 669
            ..|..:.:...|:.|.:::.||:.|.|.|.:||: |..::.:|...:.|...|......:..:..
 Frog   623 YCGKGEDLCHNDSYVTIQNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAP 687

  Fly   670 NWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINV--------IQKAHNMELEPTPGNTLR 726
            .:|...|.||||||....        |.:.|||.|:::.        |:..:..:|:|.||.:..
 Frog   688 VFLSNRGFSIGIGDVTPG--------QGLLKAKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAE 744

  Fly   727 QTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP 791
            :|.|..:.|.|:..||..|.:..:.|.:.|:...|.:.|||||.|||||:|||||||.:.|.|:|
 Frog   745 ETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVP 809

  Fly   792 YGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRL 856
            .||..|:||||.|....|.::|||.||:.:||||:||:||.|.|||||:|||||||||||:||||
 Frog   810 DGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRL 874

  Fly   857 IKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERL 921
            :|::|.:...||.|||:|.|.:||..||.|||....:|.::.|.          .||      |:
 Frog   875 VKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPL----------EFK------RV 923

  Fly   922 MKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGESKVVLPCNLQ------RMIW 980
            ::.|                                          |.|.||:.:      .:|.
 Frog   924 LENV------------------------------------------KAVYPCSEEPALSKNELIL 946

  Fly   981 NVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTG-NDRISKQ-----ANENATLLFQCLIRS 1039
            ..:.|....:.|....|.::.||         ..||| ::||.|.     .|:|.|...:.|.:.
 Frog   947 TSESIMKKTEFLCCQDSYLQEIK---------KFVTGVSERIKKTRDKYGINDNGTTEPRVLYQL 1002

  Fly  1040 TLCTKYVSEEFRLSTEAFEWLVGEIET---RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHF 1101
            ...|....|:|             :||   ::.:||..||..||||.|||:|||.|||||.||||
 Frog  1003 DRITPTQLEKF-------------LETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHF 1054

  Fly  1102 AGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTA 1166
            |||:|.|:||||||:|||||.||....|.:|..|  ....||:.|:.|..|:|            
 Frog  1055 AGVASMNITLGVPRIKEIINASKNISTPIITAHL--DIDDDADFARLVKGRIE------------ 1105

  Fly  1167 IYYDPDPQRTVISEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINV 1229
                    :|::.|..|::...: :||  |       .|:::.|:|.|:    |.:|..||.:..
 Frog  1106 --------KTLLGEISEYIEEVF-LPDDCF-------LLVKLSLERIRL----LRLEVNAETVRY 1150

  Fly  1230 GF---------------GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
            ..               ||.:.|:...:|:...:..:                :..:::|     
 Frog  1151 SICMSKLRVKPGDIAVHGEAVLCVTPRENSKSSMYYV----------------LQSLKED----- 1194

  Fly  1280 IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDV 1344
                 |..:.:|||..:.:..:|:.:...|::              :.|..:|.::..|::...|
 Frog  1195 -----LPKVVVQGIPEVARAVIHIDEQSGKEK--------------YKLLVEGDNLRSVMATHGV 1240

  Fly  1345 DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1409
            ...||:||:..|:.:.|||||.|.::..|:...:..:|:.::.||:.||.|:||.||.::.|||.
 Frog  1241 KGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKGEVLGITRF 1305

  Fly  1410 GINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 1471
            |:.:.....||..|||:|.|.|.|||...:.|.:.||||.||||....:|||.|.||..|:|
 Frog  1306 GLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADK 1367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII215NP_511124.1 PRK08566 14..887 CDD:236292 345/937 (37%)
RNAP_II_RPB1_N 15..868 CDD:259848 334/917 (36%)
RNA_pol_Rpb1_5 822..1420 CDD:282807 181/629 (29%)
RNA_pol_Rpb1_6 890..1071 CDD:282801 31/195 (16%)
RNAP_II_Rpb1_C 1050..1468 CDD:132720 134/437 (31%)
TCRP1 1602..1880 CDD:291605
RCR <1789..1864 CDD:304939
polr3aNP_001096178.1 RNAP_III_RPC1_N 23..890 CDD:259847 335/913 (37%)
RNAP_III_Rpc1_C 1020..1359 CDD:132723 128/412 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D591636at2759
OrthoFinder 1 1.000 - - FOG0000819
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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