Sequence 1: | NP_511124.1 | Gene: | RpII215 / 32100 | FlyBaseID: | FBgn0003277 | Length: | 1887 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001096178.1 | Gene: | polr3a / 100124725 | XenbaseID: | XB-GENE-1012749 | Length: | 1390 | Species: | Xenopus tropicalis |
Alignment Length: | 1557 | Identity: | 512/1557 - (32%) |
---|---|---|---|
Similarity: | 778/1557 - (49%) | Gaps: | 298/1557 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 12 RQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLG-GLMDPRQGVIDRTSRCQTCAGNMT 75
Fly 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPK-----IKE---IVMKSRGQ 132
Fly 133 PRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRTGLDLTAEWKHQ 197
Fly 198 N--------------------EDSQEKKIVVSAER-------VWEILKHITDEECFILGMDPKYA 235
Fly 236 RPDWMIVTVLPVPPLAVRPAVVM-FGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENI 299
Fly 300 KMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN 364
Fly 365 LRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVR-----------DNGER 418
Fly 419 I--DLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT 481
Fly 482 SPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVF 546
Fly 547 ITREQVMNLL-MFLPTWDAK----MPQPCILKPRPLWTGKQIFSLII-PGNVNMIRTHSTHPDEE 605
Fly 606 DEGPYKWISPGDTKVMVEHGELIMGILCKKSLGT-SAGSLLHICFLELGHDIAGRFYGNIQTVIN 669
Fly 670 NWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINV--------IQKAHNMELEPTPGNTLR 726
Fly 727 QTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP 791
Fly 792 YGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRL 856
Fly 857 IKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERL 921
Fly 922 MKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGESKVVLPCNLQ------RMIW 980
Fly 981 NVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTG-NDRISKQ-----ANENATLLFQCLIRS 1039
Fly 1040 TLCTKYVSEEFRLSTEAFEWLVGEIET---RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHF 1101
Fly 1102 AGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTA 1166
Fly 1167 IYYDPDPQRTVISEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINV 1229
Fly 1230 GF---------------GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRC 1279
Fly 1280 IEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDV 1344
Fly 1345 DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 1409
Fly 1410 GINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 1471 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII215 | NP_511124.1 | PRK08566 | 14..887 | CDD:236292 | 345/937 (37%) |
RNAP_II_RPB1_N | 15..868 | CDD:259848 | 334/917 (36%) | ||
RNA_pol_Rpb1_5 | 822..1420 | CDD:282807 | 181/629 (29%) | ||
RNA_pol_Rpb1_6 | 890..1071 | CDD:282801 | 31/195 (16%) | ||
RNAP_II_Rpb1_C | 1050..1468 | CDD:132720 | 134/437 (31%) | ||
TCRP1 | 1602..1880 | CDD:291605 | |||
RCR | <1789..1864 | CDD:304939 | |||
polr3a | NP_001096178.1 | RNAP_III_RPC1_N | 23..890 | CDD:259847 | 335/913 (37%) |
RNAP_III_Rpc1_C | 1020..1359 | CDD:132723 | 128/412 (31%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D591636at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000819 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |