DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SA and PGRP-LF

DIOPT Version :10

Sequence 1:NP_572727.1 Gene:PGRP-SA / 32099 FlyBaseID:FBgn0030310 Length:203 Species:Drosophila melanogaster
Sequence 2:NP_648299.3 Gene:PGRP-LF / 39064 FlyBaseID:FBgn0035977 Length:369 Species:Drosophila melanogaster


Alignment Length:195 Identity:69/195 - (35%)
Similarity:105/195 - (53%) Gaps:7/195 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LVLLLLAFVSAG------KSRQRSPANCPTIKLKRQWGGKPSLGLHYQVR-PIRYVVIHHTVTGE 73
            ::||::..::||      .....||.....|..:.:|.|:|..|.:..:: |:..::||||.|..
  Fly    29 VILLMVVGLAAGYFMWMMSFSTHSPNKGLHILDRSEWLGEPPSGKYPHLKLPVSNIIIHHTATEG 93

  Fly    74 CSGLLKCAEILQNMQAYHQNELDFNDISYNFLIGNDGIVYEGTGWGLRGAHTYGYNAIGTGIAFI 138
            |.....|...::.:||:|.....:.||.||||:|.||.:|.|.||.::|.|..||.||...||||
  Fly    94 CEQEDVCIYRMKTIQAFHMKSFGWVDIGYNFLVGGDGQIYVGRGWHIQGQHVNGYGAISVSIAFI 158

  Fly   139 GNFVDKLPSDAALQAAKDLLACGVQQGELSEDYALIAGSQVISTQSPGLTLYNEIQEWPHWLSNP 203
            |.||:..|....::|||.|:..||:...|..||.:.|..|:..|:|||..|:..:|.||.:..:|
  Fly   159 GTFVNMEPPARQIEAAKRLMDEGVRLHRLQPDYHIYAHRQLSPTESPGQKLFELMQNWPRFTQDP 223

  Fly   204  203
              Fly   224  223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-SANP_572727.1 PGRP 38..179 CDD:128941 53/141 (38%)
PGRP-LFNP_648299.3 PGRP 57..199 CDD:128941 53/141 (38%)
PGRP 236..363 CDD:470657
Blue background indicates that the domain is not in the aligned region.

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