DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sk1 and LCB5

DIOPT Version :9

Sequence 1:NP_572717.1 Gene:Sk1 / 32089 FlyBaseID:FBgn0030300 Length:641 Species:Drosophila melanogaster
Sequence 2:NP_013361.1 Gene:LCB5 / 850964 SGDID:S000004250 Length:687 Species:Saccharomyces cerevisiae


Alignment Length:701 Identity:151/701 - (21%)
Similarity:266/701 - (37%) Gaps:189/701 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TANTGTSGENLMGNGGKTHEP----------------------------------STPTSDTEVA 32
            |:.|.||.::|..| .|.|.|                                  |:|:|....:
Yeast   106 TSTTDTSKDDLSAN-PKLHYPSVNGQLPANTVIPYGRILDARYIEKEPLHYYDANSSPSSPLSSS 169

  Fly    33 SGTPTELSEIFFVDNSRRKQSIKIQVKLCPEGVYLRRETEEDDHI---NEQLIRIDDIIGSRYGR 94
            ....:|..::..:::|::|:.         :|..|.|.:.....:   .....::.::|.:|   
Yeast   170 MSNISEKCDLDELESSQKKER---------KGNSLSRGSNSSSSLLTSRSPFTKLVEVIFAR--- 222

  Fly    95 RLKKRARGGLNSCRNPNVPGQEA---DSEPDSDNSAYLYIYAYLKKEKPLRRVQTLRILRFRSSN 156
                       ..|:..||.:.:   |.:|.|.        ::||:|..|               
Yeast   223 -----------PRRHDVVPKRVSLYIDYKPHSS--------SHLKEEDDL--------------- 253

  Fly   157 DYGVNLQTAEMWHHTIRKHKRGNGSSSPADCGKQLLILLNPKSGSGKGRELFQKQVAPLLTEAEV 221
                   ..|:...:.:..:|          .|.:.:::||..|.||.::||..:..|||..:..
Yeast   254 -------VEEILKRSYKNTRR----------NKSIFVIINPFGGKGKAKKLFMTKAKPLLLASRC 301

  Fly   222 QYDLQITTHPQYAKEFVRTRRDLLTRYSGIVVASGDGLFYEVLNGLMERMDWRRACRELPLGIIP 286
            ..::..|.:|.:|.|..|...  :.:|..|..|||||:.:||:|||.:|.|..:|...:.:..||
Yeast   302 SIEVVYTKYPGHAIEIAREMD--IDKYDTIACASGDGIPHEVINGLYQRPDHVKAFNNIAITEIP 364

  Fly   287 CGSGNGLAKSVAHHCNEPYEPKPILHATLTCMAGKSTPMDVVRVELATRDKHFVMYSFLSVGWGL 351
            |||||.::.| .|..|.|      .::||..:....|.:|::.....:..:.....||||..:||
Yeast   365 CGSGNAMSVS-CHWTNNP------SYSTLCLIKSIETRIDLMCCSQPSYAREHPKLSFLSQTYGL 422

  Fly   352 IADIDIESERLRSIGAQRFTLWAIKRLIGLRSYKGRVSYLLGKGKKEPPVEAARELPAESTAAGI 416
            ||:.||.:|.:|.:|..||.|.....:|..:.|...: |:....|.:      .||.........
Yeast   423 IAETDINTEFIRWMGPARFELGVAFNIIQKKKYPCEI-YVKYAAKSK------NELKNHYLEHKN 480

  Fly   417 RSSLPLN----------------AGEFHDLPEEEEGEAVLDGEQFADAISLDRSVYRQHADSWHS 465
            :.||...                ..|:....|:|:.:|..|.|.       ...:.|..|||  |
Yeast   481 KGSLEFQHITMNKDNEDCDNYNYENEYETENEDEDEDADADDED-------SHLISRDLADS--S 536

  Fly   466 AMSRRTAYYSLGGP---SMRSNRSRM--SISQRIEAANAEFAERVPTGTIPPLQMPLLSSDGWIC 525
            |...:...:.:..|   .:.|:..|:  :||..:..        ..||.:|              
Yeast   537 ADQIKEEDFKIKYPLDEGIPSDWERLDPNISNNLGI--------FYTGKMP-------------- 579

  Fly   526 EDGDFVMVHAAYTTHLSSDVFFAPESRLDDGLIYLVIIRRGVSRHQLLNFMLNLNAGTHLPIGED 590
                          ::::|..|.|.:...||.:.:||.....|..::...:|.|:.|:|:...|.
Yeast   580 --------------YVAADTKFFPAALPSDGTMDMVITDARTSLTRMAPILLGLDKGSHVLQPEV 630

  Fly   591 PFIKVVPCRAFRIEPSSSDGILVVDGERVEYGPIQAEVMPGLINVMTTSGQ 641
            ...|::   |::|.|...:|:..||||:....|:|.|:||.|...:..:|:
Yeast   631 LHSKIL---AYKIIPKLGNGLFSVDGEKFPLEPLQVEIMPRLCKTLLRNGR 678

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sk1NP_572717.1 PLN02958 <189..622 CDD:215517 112/453 (25%)
DAGK_cat 191..330 CDD:279163 45/138 (33%)
LCB5NP_013361.1 LCB5 267..603 CDD:224513 97/406 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343284
Domainoid 1 1.000 90 1.000 Domainoid score I1770
eggNOG 1 0.900 - - E1_COG1597
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 155 1.000 Inparanoid score I1088
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001465
OrthoInspector 1 1.000 - - mtm9231
orthoMCL 1 0.900 - - OOG6_101566
Panther 1 1.100 - - LDO PTHR12358
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R653
SonicParanoid 1 1.000 - - X918
TreeFam 1 0.960 - -
1312.780

Return to query results.
Submit another query.