DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sk1 and ACD5

DIOPT Version :9

Sequence 1:NP_572717.1 Gene:Sk1 / 32089 FlyBaseID:FBgn0030300 Length:641 Species:Drosophila melanogaster
Sequence 2:NP_568756.2 Gene:ACD5 / 835203 AraportID:AT5G51290 Length:608 Species:Arabidopsis thaliana


Alignment Length:558 Identity:110/558 - (19%)
Similarity:199/558 - (35%) Gaps:181/558 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 VNLQTAEMW-----HHTIRKHKRGNGSSSPADCGKQLLILLNPKSGSGKGRELFQKQVAPLLTEA 219
            ::|||.:.|     :..|::.:|          .:.||:.::||||.|.|.:::: .|:.:...|
plant   139 MDLQTCQSWMDQLNYSLIKEVER----------PRNLLVFVHPKSGKGNGSKVWE-TVSKIFIRA 192

  Fly   220 EVQYDLQITTHPQYAKEFVRT--RRDLLTRYSGIVVASGDGLFYEVLNG-LMERMDWRRACRELP 281
            :|...:.:|....:|.:.:.:  .::|.| |.||:...|||.|.|:||| |:.|:       ::|
plant   193 KVNTKVIVTERAGHAFDVMASIQNKELHT-YDGIIAVGGDGFFNEILNGYLLSRL-------KVP 249

  Fly   282 LGIIPCGSGNGL----AKSVAH-----HCNEPYEPKPIL-------------------------- 311
            |...|..|.|.:    :.||..     |..:..|..|:|                          
plant   250 LPPSPSDSFNSVQSRGSSSVPEPGDEVHETDQKEHYPLLPDSVQEVMNFRTVNGSCEGIEDPDHP 314

  Fly   312 ----------------HATLTCMAGKSTP-----------------MDVVRVELATRD--KHFVM 341
                            .|.:.|..|...|                 |.|||.:.|:..  :.::.
plant   315 FSSERPRFGLIPAGSTDAIVMCTTGARDPVTSALHIILGRKLFLDAMQVVRWKTASTSTIEPYIR 379

  Fly   342 YSFLSVGWGLIADIDIESERLRSIGAQRFTLWAIKRLIGLRSYKGRVSYLLGKGKKEPPVEAARE 406
            |:....|:|...|:..|||:.|.:|.:|:.....|..:..|||:..|.:              .|
plant   380 YAASFAGYGFYGDVISESEKYRWMGPKRYDYVGTKIFLKHRSYEAEVMF--------------EE 430

  Fly   407 LPAESTAAGIRSSLPLNAGEFHDLPEEEEGEAVLDGEQFADAISLDRSVYRQHADSWHSAMSRRT 471
            ..:|::.|.:.:                                        .:.:|        
plant   431 AESENSKASLHT----------------------------------------RSKTW-------- 447

  Fly   472 AYYSLGGPSMRSNRSRMSISQRIEAANAEFA-ERVPTGTIPPLQMPLLSSDGWICEDGDFVMVHA 535
                   |...:.||...:.:    ||.:.. .:|...:......|......|....|.|:.:.|
plant   448 -------PFRNTTRSEKILCR----ANCKICNSKVGWNSASTTLNPCPEKTRWCRTKGRFLSIGA 501

  Fly   536 AYTTHLSSDVFFAP-----ESRLDDGLIYLVIIRRGVSRHQLLNFMLNLNAGTHLPIGEDPFIKV 595
            |..::.:..   ||     ::.|.||.::|::| :..||.:.|..:..|......|:..: |::.
plant   502 AVMSNRNER---APDGLVVDAHLSDGFLHLILI-KDCSRPKYLWHLTELAKRGGEPLNFE-FVEY 561

  Fly   596 VPCRAFRIEPSSSDGILVVDGERVEYGPIQAEVMPGLI 633
            ...|||.......:.:..:|||..|...:.|:|:.|||
plant   562 HKTRAFTFTSFGEESVWNLDGEIFEAHQLSAQVLRGLI 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sk1NP_572717.1 PLN02958 <189..622 CDD:215517 99/511 (19%)
DAGK_cat 191..330 CDD:279163 46/209 (22%)
ACD5NP_568756.2 PLN02204 1..608 CDD:215126 110/558 (20%)
LCB5 163..603 CDD:224513 104/524 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1597
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D681139at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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