DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sk1 and Cerk

DIOPT Version :9

Sequence 1:NP_572717.1 Gene:Sk1 / 32089 FlyBaseID:FBgn0030300 Length:641 Species:Drosophila melanogaster
Sequence 2:NP_001128333.1 Gene:Cerk / 300129 RGDID:1305019 Length:531 Species:Rattus norvegicus


Alignment Length:584 Identity:139/584 - (23%)
Similarity:222/584 - (38%) Gaps:187/584 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 ARGGLNSCRNPNVPGQEADSEPDSDNSAYLYIYAYLKKEKPLRRVQTLRILRFRSSNDYGVNL-- 162
            ||..|...|:|. ||..| .:||:.:.....|.|.  :||.:.:.|:......|..|.:...:  
  Rat    28 ARALLRWWRSPE-PGPSA-PDPDAYSVPVSEIIAV--EEKEVHQKQSSNGRWHRMENPFAFTVHC 88

  Fly   163 ---------------------QTAEMWHHTIRKHKRGNGSSSPADCGKQLLILLNPKSGSGKGRE 206
                                 |..::|..|:|:... |.:|.|    |.||:.:||..|.|:|:.
  Rat    89 VKRARHHRWKWARVTFWSADEQLCQLWLQTLRELLE-NLTSRP----KHLLVFINPFGGKGQGKH 148

  Fly   207 LFQKQVAPLLTEAEVQYDLQITTHPQYAKEFVRTRRDLLT-RYSGIVVASGDGLFYEVLNGLMER 270
            :::|:||||.|.|.:..::.||.|...|||   |..::.| .|.|||...|||:|.|||:|::.:
  Rat   149 IYEKKVAPLFTLASITTEIIITEHANQAKE---TLYEINTDSYDGIVCVGGDGMFSEVLHGVIGK 210

  Fly   271 M--------DWRRAC---RELPLGIIPCGS---------GNGLAKSVAHHCNEPYEPKPILHATL 315
            .        :..||.   ..|.:||||.||         |...|::.|.|               
  Rat   211 TQQSAGVDPNHPRAVLVPSTLRIGIIPAGSTDCVCYSTVGTNDAETSALH--------------- 260

  Fly   316 TCMAGKSTPMDVVRVELATRDKHFVMYSFLSVGWGLIADIDIESERLRSIGAQRFTLWAIKRLIG 380
             .:.|.|..:||..|.   .:...:.||...:|:|...|:..:||:.|.:|..|:....:|..:.
  Rat   261 -IIIGDSLAIDVSSVH---HNSTLLRYSVSLLGYGFYGDLIKDSEKKRWMGLVRYDFSGLKAFLS 321

  Fly   381 LRSYKGRVSYLLGKGKKEPPVEAARELPAESTAAGIRSSLPLNAGEFHDLPEEEEGEAVLDGEQF 445
            .:.|:|.||:                |||:.|....|...|..||                    
  Rat   322 HQYYEGTVSF----------------LPAQHTVGSPRDQKPCRAG-------------------- 350

  Fly   446 ADAISLDRSVYRQHADSWHSAMSRRTAYYSLGGPSMRSNRSRMSISQRIEAANAEFAERVPTGTI 510
               .|:.|...||..:      .::.|.|.|                    .|||..|.      
  Rat   351 ---CSVCRQSKRQLEE------EQKKALYGL--------------------ENAEEVEE------ 380

  Fly   511 PPLQMPLLSSDGWICEDGDFVMVHAAYTTHLS-----SDVFFAPESRLDDGLIYLVIIRRGVSRH 570
                        |....|.|:.::   :|::|     |....:|.:.|.||...|::||: .||.
  Rat   381 ------------WQVVCGKFLAIN---STNMSCACPRSPGGLSPFAHLGDGSSDLILIRK-CSRF 429

  Fly   571 QLLNFML-NLNAGTHLPIGED----PFIKVVPCRAFR-----IEPSSSDGILVVDGERVEYGPI 624
            ..|.|:: :.|.       ||    .|::|...:.|:     :|...:|   :.:.|:.::|.|
  Rat   430 NFLRFLIRHTNQ-------EDQFGFTFVEVYRVKKFQFTSKHVEDDDND---LKELEKQKFGQI 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sk1NP_572717.1 PLN02958 <189..622 CDD:215517 113/468 (24%)
DAGK_cat 191..330 CDD:279163 51/159 (32%)
CerkNP_001128333.1 DAGK_cat 55..528 CDD:412815 129/555 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339905
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1597
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D681139at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.750

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