DRSC/TRiP Functional Genomics Resources

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Protein Alignment hop and Csk

DIOPT Version :10

Sequence 1:NP_511119.2 Gene:hop / 32080 FlyBaseID:FBgn0004864 Length:1177 Species:Drosophila melanogaster
Sequence 2:NP_001025210.1 Gene:Csk / 315707 RGDID:1308800 Length:450 Species:Rattus norvegicus


Alignment Length:469 Identity:130/469 - (27%)
Similarity:204/469 - (43%) Gaps:111/469 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   711 VTKYDPNSYVLDAKISDPG-YPRPY---RE--------SDSPWIPVKYYRN-----LQAAKTDQF 758
            ||| |||.|....|:...| .|..|   ||        |..||...|..|.     |...:|..|
  Rat    41 VTK-DPNWYKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHGKITREQAERLLYPPETGLF 104

  Fly   759 AQLWAFATTI---YEIFSRCKEDLSTLRQEQLLRQKNLD-----GNILKMLDQDICPAPIFETIM 815
              |...:|..   |.:...|:..:...|......:.::|     .|::::::.       :.|..
  Rat   105 --LVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEH-------YTTDA 160

  Fly   816 DGWSDDETKRFSHHDIFSRLNTIKAEILPNYMPPPEIATNGTGDETVIDRSDIPFLPFPRSNMLM 880
            ||             :.:||  ||.:::.        .|....||            |.||...:
  Rat   161 DG-------------LCTRL--IKPKVME--------GTVAAQDE------------FYRSGWAL 190

  Fly   881 VIPLTSECRVIYNMENM-----IGRGHYGTVYKGHLEFNDKDQPREQVAIKMLNTMQVSTDFHRE 940
                        ||:.:     ||:|.:|.|..|       |....:||:|.:.....:..|..|
  Rat   191 ------------NMKELKLLQTIGKGEFGDVMLG-------DYRGNKVAVKCIKNDATAQAFLAE 236

  Fly   941 IGIMRTLSHPNIVKF--KYWAEKSHC-IIMEYLQSGSFDIYLRFTAPN-LNNPRLVSFALDIANG 1001
            ..:|..|.|.|:|:.  ....||... |:.||:..||...|||....: |....|:.|:||:...
  Rat   237 ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA 301

  Fly  1002 MKYLSDMGLIHRDLAARNILVDHNGDGDCVKISDFGLAQFANSDGYYYAKSKRDIPIRWYSPEAI 1066
            |:||.....:||||||||:||   .:.:..|:|||||.:.|:|     .:....:|::|.:|||:
  Rat   302 MEYLEGNNFVHRDLAARNVLV---SEDNVAKVSDFGLTKEASS-----TQDTGKLPVKWTAPEAL 358

  Fly  1067 STCRFSSYSDVWSYGVTLFEMFSRGEEP-NLVPIQTSQEDFLNRLQSGERLNRPASCPDFIYDLM 1130
            ...:||:.|||||:|:.|:|::|.|..| ..:|:    :|.:.|::.|.:::.|..||..:||:|
  Rat   359 REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL----KDVVPRVEKGYKMDAPDGCPPAVYDVM 419

  Fly  1131 QLCWHATPRSRPSF 1144
            :.|||....:||:|
  Rat   420 KNCWHLDAATRPTF 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hopNP_511119.2 B41 39..259 CDD:214604
SH2_Jak_family 420..516 CDD:198177
PTK_Jak_rpt1 584..836 CDD:270633 32/149 (21%)
PTKc_Jak_rpt2 886..1155 CDD:270634 89/269 (33%)
CskNP_001025210.1 Interaction with PTPN22. /evidence=ECO:0000250|UniProtKB:P41240 9..70 12/29 (41%)
SH3_CSK 11..67 CDD:212703 11/26 (42%)
SH2_csk_like 78..175 CDD:198190 22/128 (17%)
PTKc_Csk 188..443 CDD:133213 89/277 (32%)
Blue background indicates that the domain is not in the aligned region.

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