DRSC/TRiP Functional Genomics Resources

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Protein Alignment hop and srms

DIOPT Version :10

Sequence 1:NP_511119.2 Gene:hop / 32080 FlyBaseID:FBgn0004864 Length:1177 Species:Drosophila melanogaster
Sequence 2:NP_001129722.2 Gene:srms / 100192213 ZFINID:ZDB-GENE-081022-95 Length:492 Species:Danio rerio


Alignment Length:488 Identity:139/488 - (28%)
Similarity:209/488 - (42%) Gaps:113/488 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   730 YPRPYRESDSPWIPVKYYRNLQA-----AKTDQFAQLWAFATTIYEIFSRCKEDLSTLRQEQL-- 787
            ||..:|..|        .|.:..     |...:.|||:|   .:::..:|.:|:||....::|  
Zfish    24 YPNLHRPDD--------IRTVSGDIRVPAPKKKPAQLYA---ALFDFVARSEEELSVKEGDKLSV 77

  Fly   788 -------LRQKNLDGNILKMLDQDICPAPIFETIMD-----GW----------------SDDETK 824
                   :..|.|.|:    |:..:.||.....:.|     .|                |:::|.
Zfish    78 IEKRGDYVFAKKLTGS----LESGLIPANYVALLKDEFANYKWYYGNINRQKAEKLLLSSENKTG 138

  Fly   825 RF------SHHDIFSRLNTIKAEI-------------LPNYMPPPEIATNGTGDETVIDRSDIPF 870
            .|      ||.|.:    ||.|..             :..|....:|:. ||.||.:        
Zfish   139 SFLVRISESHSDEY----TISARSENSVFHFRIHRSPIGAYFVSEKISF-GTLDELI-------- 190

  Fly   871 LPFPRSNMLMVIPLTSEC---RVIYNME------------NMIGRGHYGTVYKGHLEFNDKDQPR 920
            ..:.:::..:...:...|   |.:::||            ..:|.||:|.|::...:...|    
Zfish   191 RYYQQNSRSLGCHIDQPCVQRRELFDMEPWERPREEFMLVKKLGEGHFGEVWEAIWKTQKK---- 251

  Fly   921 EQVAIKMLNTMQVSTD-FHREIGIMRTLSHPNIVKFKYWAEKSH--CIIMEYLQSGSFDIYLRFT 982
             :||||||.......| |.:|:..::.|.||.:::......:..  .|:.|.:..||...||...
Zfish   252 -KVAIKMLKQEDTKLDEFVKEVHALKNLHHPKLIELLALCSRGEPVYIVTELMAKGSLKSYLSSA 315

  Fly   983 APN-LNNPRLVSFALDIANGMKYLSDMGLIHRDLAARNILVDHNGDGDCVKISDFGLAQFANSDG 1046
            ... |.:..|:..|..||.||.||.|..::|||||||||||   |:....|::|||||:.. .|.
Zfish   316 EGQLLTSAHLIYMAAQIAEGMAYLEDRHIVHRDLAARNILV---GNDLVCKVADFGLARII-KDS 376

  Fly  1047 YYYAKSKRDIPIRWYSPEAISTCRFSSYSDVWSYGVTLFEMFSRGEEPNLVPIQTSQEDFLNRLQ 1111
            .:.|.....||:||.:|||....|||..|||||:||.|:||.|||:.|  ...:|::| .:..|.
Zfish   377 VFTASKTTKIPVRWTAPEAALYQRFSVKSDVWSFGVLLYEMMSRGKMP--YDGKTNKE-VMEALS 438

  Fly  1112 SGERLNRPASCPDFIYDLMQLCWHATPRSRPSF 1144
            ||.||..|..||..||.:|..||:.....||||
Zfish   439 SGYRLACPNHCPPNIYRIMLECWNNEASKRPSF 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hopNP_511119.2 B41 39..259 CDD:214604
SH2_Jak_family 420..516 CDD:198177
PTK_Jak_rpt1 584..836 CDD:270633 29/146 (20%)
PTKc_Jak_rpt2 886..1155 CDD:270634 101/278 (36%)
srmsNP_001129722.2 SH3 52..106 CDD:473055 13/60 (22%)
SH2 116..193 CDD:425423 16/89 (18%)
Protein Kinases, catalytic domain 220..481 CDD:473864 97/264 (37%)
Blue background indicates that the domain is not in the aligned region.

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