DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapvd1 and vps9d1

DIOPT Version :10

Sequence 1:NP_572704.1 Gene:Gapvd1 / 32070 FlyBaseID:FBgn0030286 Length:1712 Species:Drosophila melanogaster
Sequence 2:XP_005169985.1 Gene:vps9d1 / 503773 ZFINID:ZDB-GENE-050306-57 Length:685 Species:Danio rerio


Alignment Length:739 Identity:126/739 - (17%)
Similarity:227/739 - (30%) Gaps:267/739 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1168 AAAGGSGLKPPTKATGAIPKSISFDASADKDKQTY-----------H---RDGERDRERDRERER 1218
            |..|.|.|:|...|...:..:|..| :.:|.|:.|           |   .|....:|.:.|   
Zfish     3 APLGDSSLRPLQNAMRLVKVAIQLD-TGNKHKEAYCEYLRSINYISHALLEDATSKQEGEME--- 63

  Fly  1219 DRERDRERDRERDRERDHHGAGIFNKLRQGIFKNRRGASAKNASNSSNQSNPAASTSSVQADIRS 1283
                                   |.:|.:.:....:......:.....|.:|.|.|||.     |
Zfish    64 -----------------------FVELEKMVKLVEQCLERVKSCIIRKQKSPPAVTSSA-----S 100

  Fly  1284 VSFDPSAGCDNFGTHYCDTSEDILAKYRRKVSSSSEATNSD-STGNGHGVGSTGSVGAAAHLHKH 1347
            ::..|:...         ||:..:.:...:||..||..:.: .|.:...:...|.||:.      
Zfish   101 LTTVPAMNA---------TSQPKMTETPNEVSLLSETQDKELPTRHRRVLSEGGEVGSP------ 150

  Fly  1348 MNGGHIPGVVFGCVKQKLRTVLS---RTDL----------------HSGDFRQTSTTSTTMATPL 1393
                .:|..||    |||:||.|   |.:|                :.....:.:....|..|.|
Zfish   151 ----FLPPEVF----QKLQTVESQDNRKELTPIEEASRLNQKLKANYEARLARLTPGQATQKTSL 207

  Fly  1394 QIYLQIQLAQ--CISLQRLPQISHVAEALRCLAQLERPQH----GQLLAELQRDLERRQSYLQYL 1452
            .:.||.|:.:  .|:..|...:....|..|...|.|..:.    |.:..|.|.......|.|:|.
Zfish   208 TLSLQRQMMENLIIAKARQDALQRKMEERRLRLQEEANRRFATCGTMTPEEQEQRVLYASVLEYE 272

  Fly  1453 MRHRQQLLLRS----------------------------EQLEQLEARLRGE------------- 1476
            ..|....:.::                            :.|::|:.|:...             
Zfish   273 QDHEWPKIWKAKLKKSPNDPALVSGLIACLLSYPDHPVMKLLKRLQYRVYNRLYPIVSQCSPLNT 337

  Fly  1477 ----------ARSSQRCLL----------QALVRMYLAWSRQQEKLEQFQAEFAQLRASDERVEL 1521
                      :||:...||          |:..:..|..|.....:....:.  .|.|:|.:.|.
Zfish   338 TSGHSLSLKPSRSAHSLLLSDCPISPHHQQSPFKSALTHSLSDASISLSPSR--DLNANDTKSEA 400

  Fly  1522 TEEFVESLLQELRSSADLQDEWQVDAARVAIERMLLEQMY------------EQVMFPNEDADVS 1574
            ..:...|||     :.|.::.::      .:|:.|.:..:            ..|.|.::..|: 
Zfish   401 DPDDSSSLL-----TTDRENSFE------DLEKFLTQLDWVPSHSGDDDDTDPDVTFESQIHDL- 453

  Fly  1575 RDEVLSAHIGKLQRFVHPA-------------------------------------HPALCIAQE 1602
            .:..|..|:..:.:.:|.|                                     .|.|.:.::
Zfish   454 EERALKEHLKAIVKDIHNAIDRLLSLCLLSFECLNTANSKDQCVASMEEVFFTPIWRPLLALFRK 518

  Fly  1603 YLGEA-------------------------------------PWTFAQQQLCHMAAYKTPREKLQ 1630
            ..||.                                     |:..|.|:|..:.....|::||:
Zfish   519 VHGEREQAVESSMHLYHHVSPGDVGVASKLFPRDLAVLHGSYPYESAVQELKLLCREYCPQKKLE 583

  Fly  1631 CIINCISSIMSL---LRMSSGRVP-------AADDLLPVLIYVVIMANPPYLLSTVEYISCFLGK 1685
            ||:..:..|...   .|:.....|       .||||||:|.:|.:.:..|.|:|....:..|:.:
Zfish   584 CIVRTLRIICGCAEDYRLLQENDPPPRSAAIGADDLLPILAFVALRSEMPQLVSECAALEEFIHE 648

  Fly  1686 -KLEGEDEFYWTLFGSVVKFIKTM 1708
             .|.||:.:..|...|.:.::::|
Zfish   649 GYLIGEEGYCLTSLQSALTYVESM 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapvd1NP_572704.1 RasGAP_RAP6 90..460 CDD:213331
MSCRAMM_ClfA <546..910 CDD:468110
YhaN 1412..>1540 CDD:443752 29/192 (15%)
VPS9 1609..1709 CDD:460489 29/111 (26%)
vps9d1XP_005169985.1 VPS9 562..674 CDD:460489 29/111 (26%)
Blue background indicates that the domain is not in the aligned region.

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