DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gapvd1 and gapvd1

DIOPT Version :9

Sequence 1:NP_572704.1 Gene:Gapvd1 / 32070 FlyBaseID:FBgn0030286 Length:1712 Species:Drosophila melanogaster
Sequence 2:XP_009302368.1 Gene:gapvd1 / 436693 ZFINID:ZDB-GENE-040718-117 Length:1484 Species:Danio rerio


Alignment Length:1811 Identity:467/1811 - (25%)
Similarity:757/1811 - (41%) Gaps:446/1811 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 EIMDLARTLRQEQLFIQQEQAAFAQLTGAFESNAGTITKLAFVCAQQRQILNELLLARTDQDPLL 75
            :|..||..|:||:|::..|:....:|.......|..:.:.|::..|||..|:.|:|...:..|..
Zfish     5 DIHTLAHHLKQERLYVASEKQLIQRLNNEVLKTAERLYRAAWIAKQQRINLDRLILTSAEASPAE 69

  Fly    76 FCRRASAYDSAQFVDAKQLLPYEHALAYEDLFNYLYNTPYLLALSLATADRLSLLSASQLGQIIN 140
            .|:.|...:..||||..:.|.::.:: |.:..:.|...|.|:|..|...:|   |:......:|:
Zfish    70 CCQHAKFLEDTQFVDGYKTLGFQESI-YGEFLSRLRENPRLVASCLVAGER---LNNEHTQGVIH 130

  Fly   141 TIATGLYGNAINTKDVELLLKLLRELIEIQLLTSEQPRRLLRTNSSSFARLYQRLVESLFSARIF 205
            |:.|.||||.|..:|...||::||.|:|.:|..::.||||||..:.:|:.|::...|.|:||::|
Zfish   131 TVFTTLYGNCIMQEDESYLLQVLRYLVEFELKENDNPRRLLRRGTCAFSILFKLFSEGLYSAKLF 195

  Fly   206 LTAALHAPLMGVLSEHEIWLDLDPHKLMQTFTPKEREKRFGREGDEEYQRNVARFHAETLGKLHS 270
            |||.||.|:|.:|.|.|..|:.||.||::.|||.::|:.||.:|.:||:|.|.....|...||.:
Zfish   196 LTATLHEPIMQLLVEDEDHLETDPAKLIERFTPAQQERLFGEKGTDEYRRKVQAAVEENEAKLVA 260

  Fly   271 HVQEFVKSLQQSWALFPSSLRWLLQTLSQQLRQSLRHEEQEIRQLLTDLVFTHFISPAIASADLL 335
            .|..|:..|:|:...||.||||::..:.:.|.:..|.|..|:|.:.|||:.|.||.|||.:.:..
Zfish   261 LVNTFIGYLKQNTYCFPQSLRWIVSQMYKTLARVERLEVGEVRTMCTDLLLTCFICPAIVNPEQY 325

  Fly   336 GII-DVNVSERMRHNLNQIVKLLQRLALNDED-------SELVQ--------LMELLMLGQTGED 384
            ||| |..::|..|.||.|:.:|||:||::|.|       |.|::        .:::::.|:..| 
Zfish   326 GIISDAPINEVARFNLMQVGQLLQQLAMSDADDGDPRRKSSLLKFDKMCVAAFLDVVIGGRAVE- 389

  Fly   385 VVAILPQQSDFE------RSQLAINQRELAQLVEFFRLLTARDEYDISVEERQRLQRILGRIPKQ 443
                .|..|...      |:.:.:...:|..||:|.|.:||.|:  :..||...|:.:|..:|:.
Zfish   390 ----TPPMSSMNLLEGLTRTVVYMTHNQLLALVDFVRSVTAGDQ--LREEEHLALETLLANVPQS 448

  Fly   444 QVQQQ---QQTPKDAPDSRESPEKSKKSNKSLMSLGKAKKKLAKGMSFSSGSSNHNPVPVSEPLT 505
            :..:.   :.||.:.|  :.||..:..:.|:.:.:|:....:......::..|.|  :|:..|. 
Zfish   449 RTTKSNSLELTPSNTP--QLSPATTPANKKNRLPIGQQLAAITCWEPSATSLSAH--IPLVTPF- 508

  Fly   506 NGQANTSNGSGGLGADLEHCSSHSGSNTSLSSCGANMPTTNDPLDMSTSSDPVLVFSLYNAGAKS 570
                               ..|.|.|.::::..|....::.:.|  ....:.|||.||   |...
Zfish   509 -------------------AGSRSRSRSNMAQEGETEASSQESL--QEVPEEVLVISL---GTSP 549

  Fly   571 KLKP--LTEEEVLKMNSIGQDGSNLLPAVVTTAPLAPSSNNDDVSSLEAMRRPQDDASIGN---- 629
            :..|  ::|.|||.:: :|..|..                          ..|.||..:..    
Zfish   550 QTIPGMMSENEVLTLH-LGDGGQG--------------------------DAPVDDTKLHGKPDK 587

  Fly   630 -------SDNLEAISEA----AHSVASSLDLEEQQERDVHENEDNLSDMVSANVSGRGTPNISGR 683
                   |||||.|||.    ::|| ||||||.:                  :|| .|.|..|| 
Zfish   588 TLRFSLCSDNLEGISEGPSNRSNSV-SSLDLEVE------------------SVS-EGGPGPSG- 631

  Fly   684 DTPSSQVTDGDGAGGDLGHHHGVHARAAANPQMQKMLLSKARSDIEDKFCKFELKKFEG---DEN 745
                   ::|..|...|.|..                 :..:.:::||..|||::...|   |.:
Zfish   632 -------SNGAEALQLLEHEQ-----------------ATTQDNLDDKLRKFEIRDMMGLTDDRD 672

  Fly   746 VS-IISDTWSTDVLASDSENTLDA-TVSERGDRDRNFSTPLIPSAVVLPGDNNFVVEALARAGRV 808
            :| .:|:|||||||.||.:..:|. .:.|.|....|....::...|:|....:.:.|..:.|   
Zfish   673 ISETVSETWSTDVLGSDFDPNMDEDRLQEIGAAAENALGSMLCLPVLLDPYGSTISETTSEA--- 734

  Fly   809 SGVHGPQLDASDQRSESNWSTDVLASDS--------EKLAEIDTDDNVSITTKSDTTAPQAAVLD 865
                              ||.:||.|||        |:|.|:::...|. :|..||...:.:   
Zfish   735 ------------------WSVEVLPSDSEAADLKQEERLQELESCSGVG-STSDDTEVREVS--- 777

  Fly   866 DDDEDEQTPG---SSGDGEPDPDRGNGSE--RSQEDSAF--FDAVNSYEDANLYHGASSLARSSV 923
               ....|||   .||......|..|..|  ||:..|.|  .|:|.|.:..:..|||.||:.:..
Zfish   778 ---SRPSTPGLSVVSGISATSEDIPNKIEDLRSECSSDFGGKDSVTSPDGEDSAHGAHSLSCAPS 839

  Fly   924 RTSY------HVLGGESSFQQQYKCSGADSSGRKTTPLMGTSCMRRQTS-------------AES 969
            :|..      .:..||.|      |:|              :.:|.:..             .|:
Zfish   840 QTDSLLAMFDPLSSGEGS------CTG--------------TIVRPKVHYPRPPHPPPDPPIPEA 884

  Fly   970 SISNQSLNLEEPPPPMGKHHHHHREHHHRDYHHHHRERERERERERSALKKKKHQQQEKEHRDLI 1034
            ||::..    ||.||:...|....:..|....|.:.||   ..|.||.                 
Zfish   885 SITSHM----EPRPPLFPPHLAQGDLEHPKQRHSYPER---LVRSRST----------------- 925

  Fly  1035 DFSDCSEDKEELARNRDEEQPPGLVQQLLDMINQDEQTGAVS---SSSPNVEHRRISIEQRSAII 1096
                     :.::..|.....|||.::  .|:.:.:..||.|   :|||:.:..:...|.|.   
Zfish   926 ---------DVVSAGRRPNSDPGLNRR--TMMEERDPAGAYSTGPTSSPSKDSLKGESEDRK--- 976

  Fly  1097 DGRRNGILAGSMRRHQSLNYENHEIMLNSMLPKTDDDKQEMLLCVQTQQLQLEERRGSAGLRPEV 1161
                                            .:||:|.:.                        
Zfish   977 --------------------------------DSDDEKSDR------------------------ 985

  Fly  1162 DGASGIAAAGGSGLKP--PTKATGAIPKSISFDASADKDKQTYHRDGE----------RDRERDR 1214
                         .:|  ..:...||||.:.:.|           :||          ||:....
Zfish   986 -------------NRPWWKKRFVPAIPKVLYWTA-----------EGELPVPIAGLRKRDKAEKD 1026

  Fly  1215 ERERDRERDRERDRERDRERDHHGAGIFNKLRQGIFKNRRGASAKNAS------NSSNQSNPAAS 1273
            |:..:|....|....|...:......|.:|..:  :..:|.|.|..|:      ..|.:...:..
Zfish  1027 EQGAERVPQDEPSLLRQSSKTQSAEAIMDKYIR--YMEKRPAQADGATAGGYVGQESCREGDSEH 1089

  Fly  1274 TSSVQADIRSVSFDPSAGCDNFGTHYCDTSEDILAKYRRKVSSSSEATNSDSTGNGHGVGSTGSV 1338
            .|.....::::|.|             |..:          |:|..|...|.|.:          
Zfish  1090 DSPKDEALQNISAD-------------DLPD----------SASQTAPPQDKTFS---------- 1121

  Fly  1339 GAAAHLHKHMNGGHIPGVVFGCVKQKLRTVLSRTDLHSGDFRQTSTTSTTM---ATP----LQIY 1396
                               |..:|:|||..|...|.........:||...:   |.|    :..:
Zfish  1122 -------------------FSDIKKKLRLALCSADSVVFPIIPPATTRNGLPDHADPEDNEIVCF 1167

  Fly  1397 LQIQLAQCISLQRLPQISHVAEALRCLAQLERPQHGQLLAELQRDLERRQSYLQYLMRHRQQLLL 1461
            |::|||:.|:||...|::.:.|..||::.|:.....:||..:..|..:|..|:.||.|.||.|..
Zfish  1168 LKVQLAEAINLQDKNQMAQIQETTRCVSHLDPRTCRKLLTAMAEDYRKRAPYIAYLTRCRQGLQT 1232

  Fly  1462 RSEQLEQLEARLRGEARSSQRCLLQALVRMYLAWSRQQEKLEQFQAEFAQLRASDERVELTEEFV 1526
            ....||:|..|:..:...:.|......||:.|  ...:.|:..|...|....|:|::....|:|:
Zfish  1233 SQAHLERLLQRVLRDKEVANRYFTTVCVRLLL--EHMESKMLDFIKAFQGCTAADDKTAAVEDFL 1295

  Fly  1527 ESLLQELRSSADLQ--DEWQVDAARVAIERMLLEQMYEQVMFPNEDADVSRDEVLSAHIGKLQRF 1589
            ..|...:...|..|  .|.|:..|::||||.::.::::...:||:|.|:.|||:...||.:|.|.
Zfish  1296 RYLYGAMAHDAIWQYASEEQLQDAQMAIERSVMNRIFKLAFYPNQDGDIHRDELFHEHIQRLSRV 1360

  Fly  1590 VHPAHPALCIAQEYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSS-GRVPAA 1653
            |...|.||.|.:.||.||||..||.::..:.||||||:|:|||:...|:||:||.::: ..||.|
Zfish  1361 VSANHKALQIPEVYLKEAPWPSAQAEIKTINAYKTPRDKVQCILRMCSTIMNLLSLANEDAVPGA 1425

  Fly  1654 DDLLPVLIYVVIMANPPYLLSTVEYISCFLGKKLEGEDEFYWTLFGSVVKFIKTMD 1709
            ||.:|||::|:|.||||.||||::||:.|...:|.||:.::|..|.:.|:||||:|
Zfish  1426 DDFVPVLVFVLIKANPPCLLSTIQYINNFYASRLSGEECYWWMQFTAAVEFIKTID 1481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapvd1NP_572704.1 RasGAP_RAP6 90..460 CDD:213331 131/394 (33%)
VPS9 1609..1709 CDD:280383 49/100 (49%)
gapvd1XP_009302368.1 RasGAP_RAP6 84..449 CDD:213331 128/375 (34%)
VPS9 1380..1481 CDD:280383 49/100 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583232
Domainoid 1 1.000 154 1.000 Domainoid score I4237
eggNOG 1 0.900 - - E2759_KOG2319
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 490 1.000 Inparanoid score I1375
OMA 1 1.010 - - QHG47432
OrthoDB 1 1.010 - - D196591at33208
OrthoFinder 1 1.000 - - FOG0008423
OrthoInspector 1 1.000 - - oto39675
orthoMCL 1 0.900 - - OOG6_105565
Panther 1 1.100 - - LDO PTHR23101
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2763
SonicParanoid 1 1.000 - - X6414
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.800

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