DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gapvd1 and rabgef1l

DIOPT Version :10

Sequence 1:NP_572704.1 Gene:Gapvd1 / 32070 FlyBaseID:FBgn0030286 Length:1712 Species:Drosophila melanogaster
Sequence 2:NP_957235.1 Gene:rabgef1l / 393915 ZFINID:ZDB-GENE-040426-813 Length:470 Species:Danio rerio


Alignment Length:230 Identity:63/230 - (27%)
Similarity:113/230 - (49%) Gaps:27/230 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly  1502 LEQFQAE----FAQLRASDERV------------ELTEEFVESLLQELRSSADLQDEWQVDAARV 1550
            |:.||..    |.|..|..|.:            :..::|.:|:.:.|:::.....| .|:....
Zfish   139 LKPFQRPGYDIFKQCHAFAENIAHKKVVGCEDLSDSVQDFYQSMSEYLQTNFKGSPE-VVETVME 202

  Fly  1551 AIERMLLEQMYEQVMFPNEDADVSRDEVLSAHIGKLQRFVHPAHPA-LCI-AQEYLGEAPWTF-- 1611
            .:||.::.::|||:..|:...|..:|..:...|    |.:|....| ||: ..|.:.:...:.  
Zfish   203 EVERYVMGRLYEQLFCPDHTDDEKKDLTVQKRI----RALHWVSIAMLCVPLDEQIPKVSDSVER 263

  Fly  1612 AQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSSGRVPAADDLLPVLIYVVIMANPPYLLSTV 1676
            |:..|.::.:.|.|:|||.|:..|...|::.::.|.....:|||.||.|:|:::.||||.|.|.:
Zfish   264 AKTDLINLDSKKVPKEKLACVTRCSKHILTAIQGSKKAAASADDFLPALVYIILKANPPRLHSNI 328

  Fly  1677 EYIS--CFLGKKLEGEDEFYWTLFGSVVKFIKTMD 1709
            :||:  |...:.:.|||.:|:|.....|.||:.:|
Zfish   329 QYITRYCNPSRLMSGEDGYYFTNLCCAVSFIEKLD 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapvd1NP_572704.1 RasGAP_RAP6 90..460 CDD:213331
MSCRAMM_ClfA <546..910 CDD:468110
YhaN 1412..>1540 CDD:443752 10/53 (19%)
VPS9 1609..1709 CDD:460489 35/103 (34%)
rabgef1lNP_957235.1 zf-A20 17..40 CDD:460313
DUF5601 151..213 CDD:465668 10/62 (16%)
VPS9 261..363 CDD:460489 35/101 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.