DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapvd1 and muk1

DIOPT Version :10

Sequence 1:NP_572704.1 Gene:Gapvd1 / 32070 FlyBaseID:FBgn0030286 Length:1712 Species:Drosophila melanogaster
Sequence 2:NP_001342780.1 Gene:muk1 / 2540384 PomBaseID:SPBC29A10.11C Length:402 Species:Schizosaccharomyces pombe


Alignment Length:254 Identity:55/254 - (21%)
Similarity:101/254 - (39%) Gaps:48/254 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1481 QRCLLQALVRMYLAWSRQ----QEKLEQFQAEFAQLRASDERVELTEEFVESLLQELRSSAD--- 1538
            |.|::|.:..:......|    :|..:.||..:..          |:||:.|.|....||.|   
pombe    35 QACVIQFISSLVSPVHPQLLSPEELAKAFQNFYKH----------TDEFIASTLIPQPSSKDQNV 89

  Fly  1539 -LQDEWQVDAARVA--------------IERMLLEQMYEQVMFPNEDADVSRDEVLSAHIGKLQR 1588
             |....::||.:.|              ||.::.|.:|:::...:...|.::|::|...|...::
pombe    90 PLLFPEEIDAQKKARQHLLNQKDEWMDQIEDIVCEYLYDRIFCLSTSTDAAKDDLLKKFIASEEK 154

  Fly  1589 ------FVHPAHPALCIAQEYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSS 1647
                  ...|....|......:.||.:...:|.        |||.|:...:...|||::..::..
pombe   155 KELINCIPIPDDEKLTNRLHEVSEAFFALDEQH--------TPRSKINTFMTVNSSILNASQLPQ 211

  Fly  1648 GRVPAADDLLPVLIYVVIMANPPYLLSTVEYISCFLGKK-LEGEDEFYWTLFGSVVKFI 1705
            ..: .||.||.:.||.::.....:|:|.:.::..|.... |.||..:..|.|.:.:.||
pombe   212 EEL-NADSLLNLTIYCILCYPGFHLISHLNFVLRFRNADFLSGEQRYCLTTFEAALTFI 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapvd1NP_572704.1 RasGAP_RAP6 90..460 CDD:213331
MSCRAMM_ClfA <546..910 CDD:468110
YhaN 1412..>1540 CDD:443752 15/66 (23%)
VPS9 1609..1709 CDD:460489 24/98 (24%)
muk1NP_001342780.1 VPS9 173..274 CDD:460489 26/106 (25%)
Blue background indicates that the domain is not in the aligned region.

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