DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapvd1 and Rabex-5

DIOPT Version :10

Sequence 1:NP_572704.1 Gene:Gapvd1 / 32070 FlyBaseID:FBgn0030286 Length:1712 Species:Drosophila melanogaster
Sequence 2:XP_061504636.1 Gene:Rabex-5 / 1276236 VectorBaseID:AGAMI1_011649 Length:808 Species:Anopheles gambiae


Alignment Length:393 Identity:89/393 - (22%)
Similarity:154/393 - (39%) Gaps:84/393 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  1355 GVVFGCVKQKLRTVLSRTDLHSGDFR-------QTSTTSTTMATPLQIYLQIQLAQCISLQRLPQ 1412
            |:...|.:::     |..:.|:..||       |.|......|:..|...|.|       |:..|
Mosquito    36 GLCSKCYRER-----SLKERHTKPFRLSKSDQQQKSGADQASASHSQSVPQQQ-------QQQQQ 88

  Fly  1413 ISHVAEALRCLAQLERPQHGQLLAELQRDLERRQSYLQYL--------------MRH--RQQL-L 1460
            .||..::|          |.:|:.:|..:.:.::..|..:              .||  ||.: .
Mosquito    89 HSHQQQSL----------HSKLIPKLSGERDEKKKKLNLIDFIKKSTPGRDSEKSRHHSRQPIEK 143

  Fly  1461 LRSEQLEQLEARLRGEARSSQRC-----LLQALVRMYLAWSRQQEKLEQFQAEFAQLR-----AS 1515
            |..|.::.|:| |:.|..:.|..     :|...:|...|.....|..|..|..:::.|     .:
Mosquito   144 LEQEYVDALKA-LKIEEAAKQELKYFIHMLDQQIRKKYATVSVDELSELVQNGYSKFRDYMHMEN 207

  Fly  1516 DERVELTEEFVESLLQELRSSADLQDEWQVDAARVAIERMLLEQMYEQVMFPNEDADVSRDEVLS 1580
            .:....|||..|.:|.                   ..||.::.:.::.:..|....|...|..:.
Mosquito   208 SKFAGATEEMREQVLD-------------------FFERCIMTKNHKYLFSPPSTDDEDNDSYIH 253

  Fly  1581 AHIGKLQRFVHPAHPALCIAQEY---LGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSL 1642
            ..|.:|....  |...:|...|.   :.|..:| |..:|..:.::.:|:|||.||:.|...|.|.
Mosquito   254 KRIRQLNWIT--AEHLMCSIDEVNSEVRELAYT-AITELASVDSFLSPQEKLDCIVRCCRHIFSF 315

  Fly  1643 LRMSSGRVPAADDLLPVLIYVVIMANPPYLLSTVEYISCF--LGKKLEGEDEFYWTLFGSVVKFI 1705
            |:.|.....:|||.||.||:||:.:||..|.|.:.:|:.|  ..:.:.||..:.:|.....:.||
Mosquito   316 LKKSVQGPASADDFLPALIFVVLKSNPVRLHSNINFITRFSNASRLMSGEGGYCFTNLCCAISFI 380

  Fly  1706 KTM 1708
            :.:
Mosquito   381 ENI 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapvd1NP_572704.1 RasGAP_RAP6 90..460 CDD:213331
MSCRAMM_ClfA <546..910 CDD:468110
YhaN 1412..>1540 CDD:443752 31/154 (20%)
VPS9 1609..1709 CDD:460489 34/102 (33%)
Rabex-5XP_061504636.1 None
Blue background indicates that the domain is not in the aligned region.

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