DRSC/TRiP Functional Genomics Resources

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Protein Alignment HOXA11 and lms

DIOPT Version :10

Sequence 1:NP_005514.1 Gene:HOXA11 / 3207 HGNCID:5101 Length:313 Species:Homo sapiens
Sequence 2:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster


Alignment Length:195 Identity:52/195 - (26%)
Similarity:75/195 - (38%) Gaps:64/195 - (32%)


- Green bases have known domain annotations that are detailed below.


Human   159 YPGDKSAEK---GPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSS 220
            ||...|.|:   .|...::||...:.         ..:||.||.|...:.|             |
  Fly    10 YPHSFSIEQILAKPEMRSSTSFEDSV---------QDESGRGGNCLGASRA-------------S 52

Human   221 SPESSS--------GHTE-----DKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRL 272
            ||.:||        |.::     |...|....|.::.|..::..||:.||.||....|::..||.
  Fly    53 SPATSSCLDDNMDDGKSDIDLASDDGNGLGDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRT 117

Human   273 QLSRMLNLTDRQVKIWFQNRRMKEKK--------------------------INRDRLQYYSANP 311
            .|::.|.||:.|:||||||||.|.|:                          :..|||..:|..|
  Fly   118 ALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARPMVVGDRLWLFSQTP 182

Human   312  311
              Fly   183  182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HOXA11NP_005514.1 DUF3528 25..153 CDD:432284
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 154..246 22/102 (22%)
Homeodomain 242..298 CDD:459649 24/55 (44%)
lmsNP_611491.2 Cnd2 33..>106 CDD:450400 21/94 (22%)
Homeodomain 87..143 CDD:459649 24/55 (44%)
Blue background indicates that the domain is not in the aligned region.

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