DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir10a and Gria3

DIOPT Version :10

Sequence 1:NP_001096949.1 Gene:Ir10a / 32067 FlyBaseID:FBgn0083979 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_058582.4 Gene:Gria3 / 53623 MGIID:95810 Length:888 Species:Mus musculus


Alignment Length:410 Identity:85/410 - (20%)
Similarity:153/410 - (37%) Gaps:73/410 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 QQPEKKYFGERSANGSYNGAIGSIIKDGLDICLTGFFVKDYLV-QQYMDFTVAVYDDELCIYVPK 302
            :.||.|.         :||.:|.::....||.:....:.  || ::.:||:.......:.|.:.|
Mouse   477 RDPETKI---------WNGMVGELVYGRADIAVAPLTIT--LVREEVIDFSKPFMSLGISIMIKK 530

  Fly   303 ASRIPQSILP-IFA----VGYDIWLGFVLTAFACALI-WLTLRVINLKLRIVSLGNQHIVGQA-- 359
                ||...| :|:    :.|:||:..|......::: :|..|....:..:.....:....|:  
Mouse   531 ----PQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQSPP 591

  Fly   360 -----LGIMVDTWV---VWVRLNLSHLPASYAERMFIGTLCLVSVIFGAIFESSLATVYIHPLYY 416
                 .||....|.   .:::......|.|.:.|:..|.....::|..:.:.::||.........
Mouse   592 DPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMV 656

  Fly   417 KDINTMQELDESGLKVVY-KYSSMADDLFFSETSPLFASLNKKLSWNRDLRADVI-----DEVAR 475
            ..|.:.::|.:. .::.| ...|.:...||..:.  .|...|..|:.:.....|.     |.|||
Mouse   657 SPIESAEDLAKQ-TEIAYGTLDSGSTKEFFRRSK--IAVYEKMWSYMKSAEPSVFTKTTADGVAR 718

  Fly   476 FRNKAGVSRYTSLILESSHFTLLRKIWVVPEC----------PKYYTISYVMPRDSPWEDAVNAL 530
            .|...|...:   :|||   |:...|.....|          .|.|.::  .|:.|.....||..
Mouse   719 VRKSKGKFAF---LLES---TMNEYIEQRKPCDTMKVGGNLDSKGYGVA--TPKGSALRTPVNLA 775

  Fly   531 LLRFLNAGLIVKWIQDEKSWVDIKMRSNILEADAES-ELVRVLTIGDLQLAFYVVIGGNLLAFLG 594
            :|:....|::.|  ...|.|.|   :......|:.| :....|::.::...||:::||..||.:.
Mouse   776 VLKLSEQGILDK--LKNKWWYD---KGECGAKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMMV 835

  Fly   595 FL--------AEHFRWKLQK 606
            .|        ||..|.||.|
Mouse   836 ALIEFCYKSRAESKRMKLTK 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir10aNP_001096949.1 Periplasmic_Binding_Protein_Type_2 220..>294 CDD:473866 12/55 (22%)
Gria3NP_058582.4 PBP1_iGluR_AMPA_GluR3 29..403 CDD:380610
PBP2_iGluR_AMPA 416..799 CDD:270433 69/352 (20%)
Blue background indicates that the domain is not in the aligned region.

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