DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir10a and Gria1

DIOPT Version :10

Sequence 1:NP_001096949.1 Gene:Ir10a / 32067 FlyBaseID:FBgn0083979 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_113796.1 Gene:Gria1 / 50592 RGDID:621531 Length:907 Species:Rattus norvegicus


Alignment Length:419 Identity:84/419 - (20%)
Similarity:158/419 - (37%) Gaps:61/419 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 RVTGVDFLVAQMLRERLNFTMLLQQPEKKYFGERSAN-GSYNGAIGSIIKDGLDIC---LTGFFV 276
            |..|....:|..:.:.:.::..|:......:|.|..: .::||.:|.::....|:.   ||...|
  Rat   434 RYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLV 498

  Fly   277 KDYLVQQYMDFTVAVYDDELCIYVPKASRIPQSILP-IFA----VGYDIWLGFVLTAFACALI-W 335
            :    ::.:||:.......:.|.:.|    ||...| :|:    :.|:||:..|......::: :
  Rat   499 R----EEVIDFSKPFMSLGISIMIKK----PQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLF 555

  Fly   336 LTLRVINLKL--------RIVSLGNQHIVGQALGIMVDTWV---VWVRLNLSHLPASYAERMFIG 389
            |..|....:.        |..:..:|   ....||....|.   .:::......|.|.:.|:..|
  Rat   556 LVSRFSPYEWHSEEFEEGRDQTTSDQ---SNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGG 617

  Fly   390 TLCLVSVIFGAIFESSLATVYIHPLYYKDINTMQELDESGLKVVYKYSSMADDLFFSETSPLFAS 454
            .....::|..:.:.::||...........|.:.::|.:. .::.|..........|...|.: |.
  Rat   618 VWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQ-TEIAYGTLEAGSTKEFFRRSKI-AV 680

  Fly   455 LNKKLSWNRDLRADVI-----DEVARFRNKAGVSRYTSLILESSHFTLLRKIWVVPEC------- 507
            ..|..::.:.....|.     :.:.|.|...|...|   :|||   |:...|.....|       
  Rat   681 FEKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKYAY---LLES---TMNEYIEQRKPCDTMKVGG 739

  Fly   508 ---PKYYTISYVMPRDSPWEDAVNALLLRFLNAGLIVKWIQDEKSWVDIKMRSNILEADAESELV 569
               .|.|.|:  .|:.|...:.||..:|:....||:.|  ...|.|.| |........|::.: .
  Rat   740 NLDSKGYGIA--TPKGSALRNPVNLAVLKLNEQGLLDK--LKNKWWYD-KGECGSGGGDSKDK-T 798

  Fly   570 RVLTIGDLQLAFYVVIGGNLLAFLGFLAE 598
            ..|::.::...||::|||..||.|..|.|
  Rat   799 SALSLSNVAGVFYILIGGLGLAMLVALIE 827

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir10aNP_001096949.1 Periplasmic_Binding_Protein_Type_2 220..>294 CDD:473866 13/77 (17%)
Gria1NP_113796.1 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 72/376 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Blue background indicates that the domain is not in the aligned region.

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