DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir10a and Grik1

DIOPT Version :10

Sequence 1:NP_001096949.1 Gene:Ir10a / 32067 FlyBaseID:FBgn0083979 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_001104587.1 Gene:Grik1 / 29559 RGDID:2732 Length:949 Species:Rattus norvegicus


Alignment Length:440 Identity:82/440 - (18%)
Similarity:163/440 - (37%) Gaps:118/440 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 MLRERLNFTMLLQQ----PEKKYFGERSANGSYNGAIGSIIKDGLDICLTGFFVKDYLVQQYMDF 287
            :|:|..|....|..    |:.|| |.::..|.:||.:..:|....|:.:....: .|:.::.:||
  Rat   482 LLKELSNILGFLYDVKLVPDGKY-GAQNDKGEWNGMVKELIDHRADLAVAPLTI-TYVREKVIDF 544

  Fly   288 TVAVYDDELCIYVPKASRIPQSILP-IFA----VGYDIWLGFVLTAFACALIWLTLRVINLKLRI 347
            :...    :.:.:....|.|....| :|:    :..|||: :||  .||..:...|.|| .:...
  Rat   545 SKPF----MTLGISILYRKPNGTNPGVFSFLNPLSPDIWM-YVL--LACLGVSCVLFVI-ARFTP 601

  Fly   348 VSLGNQH-------IVGQALGIMVDTWV---VWVRLNLSHLPASYAERMFIGTLCLVSVIFGAIF 402
            ....|.|       :|.....::...|.   ..::.....:|.:.:.|:..|.....::|..:.:
  Rat   602 YEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSY 666

  Fly   403 ESSLATVYIHPLYYKDINTMQ----ELDESGLKVVYKYSSMADD---LFFSET-----SPLFASL 455
            .::||.       :..:..|:    ..|:...:...:|.::.|.   .||.::     ..::|.:
  Rat   667 TANLAA-------FLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFM 724

  Fly   456 NKKLSWNRDLRADVIDEVARFRNK-AGVSRYT----SLILESSHFTLLRKIWVVPECPKYYTISY 515
            :.:            .:.|..:|. .|:.|..    :|::||:                  :|.|
  Rat   725 SSR------------QQSALVKNSDEGIQRVLTTDYALLMEST------------------SIEY 759

  Fly   516 VMPRD----------------------SPWEDAVNALLLRFLNAGLIVKWIQDEKSWVDIKMRSN 558
            |..|:                      ||:.|.:...:|:....|.:  .:..||.|     |.|
  Rat   760 VTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKL--HMMKEKWW-----RGN 817

  Fly   559 -ILEADA-ESELVRVLTIGDLQLAFYVVIGGNLLAFLGFLAEHFRWKLQK 606
             ..|.|: |:..:.|..||.:   |.|:..|.:|:....:.| |.:|.:|
  Rat   818 GCPEEDSKEASALGVENIGGI---FIVLAAGLVLSVFVAIGE-FLYKSRK 863

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir10aNP_001096949.1 Periplasmic_Binding_Protein_Type_2 220..>294 CDD:473866 16/70 (23%)
Grik1NP_001104587.1 PBP1_iGluR_Kainate 38..431 CDD:380605
Periplasmic_Binding_Protein_Type_2 446..815 CDD:473866 66/386 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.