DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir10a and Grik4

DIOPT Version :10

Sequence 1:NP_001096949.1 Gene:Ir10a / 32067 FlyBaseID:FBgn0083979 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus


Alignment Length:425 Identity:90/425 - (21%)
Similarity:173/425 - (40%) Gaps:80/425 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 VDFLVAQMLRERLNFTMLLQQPEKKYFGERSANGSYNGAIGSIIKDGLDICLTGFFV---KDYLV 281
            ||.|  :.|.|.|.|...::......:|...|||::.|.:|.:|....|:.:.|..:   ::.::
  Rat   449 VDML--KELAEILRFNYKIRLVGDGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREKVI 511

  Fly   282 ---QQYMDFTVAVYDDELCIYVPKASRIPQ--SILPIFAVGYDIWLGFVLTAF---ACALIWLTL 338
               :.:|...:::      :|.....|.|.  |.|..|:.|  :|| |:|.|:   :|.| :|..
  Rat   512 DFSKPFMTLGISI------LYRVHMGRRPGYFSFLDPFSPG--VWL-FMLLAYLAVSCVL-FLVA 566

  Fly   339 RVINLKL---------RIVSLGNQHIVGQALGIMVDTWVVWVRLNLSHLPASYAERMFIGTLCLV 394
            |:...:.         |...|.||:.:|.:|...|..   :::...:..|.:.:.|...|.....
  Rat   567 RLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGG---FMQQGSTIAPRALSTRCVSGVWWAF 628

  Fly   395 SVIFGAIFESSLATVYIHPLYYKDINTMQEL-DESGLK--VVYKYSSMADDLFFSETSPLFASLN 456
            ::|..:.:.::||...........|.::.:| |::.::  .::..|||.   ||..:.  :.:..
  Rat   629 TLIIISSYTANLAAFLTVQRMEVPIESVDDLADQTAIEYGTIHGGSSMT---FFQNSR--YQTYQ 688

  Fly   457 KKLSWNRDLRADVI-----DEVARFRNKAGVSRYTSLILESSHFTLLRKIWVVPEC--------- 507
            :..::....:..|.     :.:||..|    |.| :.:|||:    :.:.:....|         
  Rat   689 RMWNYMYSKQPSVFVKSTEEGIARVLN----SNY-AFLLEST----MNEYYRQRNCNLTQIGGLL 744

  Fly   508 -PKYYTISYVMPRDSPWEDAVNALLLRFLNAGLIVKWIQDEKSWVDIKMRSNILEADAESELVRV 571
             .|.|.|.  ||..|.:.|..:..:|:......:.  |...|.|...|...   |.|..::.:.:
  Rat   745 DTKGYGIG--MPVGSVFRDEFDLAILQLQENNRLE--ILKRKWWEGGKCPK---EEDHRAKGLGM 802

  Fly   572 LTIGDLQLAFYVVIGGNLLA-FLGFLAEHFRWKLQ 605
            ..||.:   |.|:|.|.::| |:..|  .|.|.|:
  Rat   803 ENIGGI---FVVLICGLIVAIFMAML--EFLWTLR 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir10aNP_001096949.1 Periplasmic_Binding_Protein_Type_2 220..>294 CDD:473866 17/79 (22%)
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:471960
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 74/368 (20%)
QRL_CxxC_CxxC 863..927 CDD:469521
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.

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