DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir10a and Gria1

DIOPT Version :10

Sequence 1:NP_001096949.1 Gene:Ir10a / 32067 FlyBaseID:FBgn0083979 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_032191.2 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus


Alignment Length:424 Identity:83/424 - (19%)
Similarity:155/424 - (36%) Gaps:71/424 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 RVTGVDFLVAQMLRERLNFTMLLQQPEKKYFGERSAN-GSYNGAIGSIIKDGLDICLTGFFVKDY 279
            |..|....:|..:.:.:.::..|:......:|.|..: .::||.:|.::....|:.:....:.  
Mouse   434 RYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTIT-- 496

  Fly   280 LV-QQYMDFTVAVYDDELCIYVPKASRIPQSILP-IFA----VGYDIWLGFVLTAFACALIWLTL 338
            || ::.:||:.......:.|.:.|    ||...| :|:    :.|:||:..|......:::    
Mouse   497 LVREEVIDFSKPFMSLGISIMIKK----PQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVV---- 553

  Fly   339 RVINLKLRIVSL-------------GNQHIV---GQALGIMVDTWV---VWVRLNLSHLPASYAE 384
                  |.:||.             |.....   ....||....|.   .:::......|.|.:.
Mouse   554 ------LFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSG 612

  Fly   385 RMFIGTLCLVSVIFGAIFESSLATVYIHPLYYKDINTMQELDESGLKVVYKYSSMADDLFFSETS 449
            |:..|.....::|..:.:.::||...........|.:.::|.:. .::.|..........|...|
Mouse   613 RIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQ-TEIAYGTLEAGSTKEFFRRS 676

  Fly   450 PLFASLNKKLSWNRDLRADVI-----DEVARFRNKAGVSRYTSLILESSHFTLLRKIWVVPEC-- 507
            .: |...|..::.:.....|.     :.:.|.|...|...|   :|||   |:...|.....|  
Mouse   677 KI-AVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKYAY---LLES---TMNEYIEQRKPCDT 734

  Fly   508 --------PKYYTISYVMPRDSPWEDAVNALLLRFLNAGLIVKWIQDEKSWVDIKMRSNILEADA 564
                    .|.|.|:  .|:.|...:.||..:|:....||:.|  ...|.|.| |........|:
Mouse   735 MKVGGNLDSKGYGIA--TPKGSALRNPVNLAVLKLNEQGLLDK--LKNKWWYD-KGECGSGGGDS 794

  Fly   565 ESELVRVLTIGDLQLAFYVVIGGNLLAFLGFLAE 598
            :.: ...|::.::...||::|||..||.|..|.|
Mouse   795 KDK-TSALSLSNVAGVFYILIGGLGLAMLVALIE 827

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir10aNP_001096949.1 Periplasmic_Binding_Protein_Type_2 220..>294 CDD:473866 12/75 (16%)
Gria1NP_032191.2 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 71/381 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Blue background indicates that the domain is not in the aligned region.

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