DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir10a and grin2b

DIOPT Version :10

Sequence 1:NP_001096949.1 Gene:Ir10a / 32067 FlyBaseID:FBgn0083979 Length:600 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:427 Identity:79/427 - (18%)
Similarity:167/427 - (39%) Gaps:82/427 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 VDFLVAQMLRERLNFTMLLQQPEKKYFGERSANGSYNGAIGSIIKDGLDICLTGFFVKDYLVQQY 284
            :|.|  :.:.:.:.||..|........|:: .||::||.||.::.....:.:....:.:.. .:.
 Frog   459 IDIL--KKIAKTVKFTYDLYLVTNGKHGKK-INGTWNGMIGEVVTKRAYMAVGSLTINEER-SEV 519

  Fly   285 MDFTVAVYDDELCIYVPKASRI--PQSILPIFAVGYDIWLGFVLTAFACALIWLTLRVINLKL-- 345
            :||:|...:..:.:.|.:::..  |.:.|..|:.  |:|    :..|...||...:.|...:.  
 Frog   520 VDFSVPFIETGISVMVSRSNGTVSPSAFLEPFSA--DVW----VMMFVMLLIVSAVAVFVFEYFS 578

  Fly   346 -----RIVSLGNQ-----HIVGQALGIMVDTWVVW-VRLNLS---HLPASYAERMFIGTLCLVSV 396
                 |.::.|.:     ..:|:|:      |::| :..|.|   ..|.....::.:......:|
 Frog   579 PVGYNRCLADGREPGGPSFTIGKAI------WLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAV 637

  Fly   397 IFGAIFESSLATVYIHPLYYKDINTMQELDESGLKVVYKYSSMADDLFF--SETSPLFA-SLNKK 458
            ||.|.:.::||...|...|                 |.:.|.::|..|.  ::.||.|. .....
 Frog   638 IFLASYTANLAAFMIQEEY-----------------VDQVSGLSDKKFQRPNDFSPAFRFGTVPN 685

  Fly   459 LSWNRDLRADVID---EVARFRNKAGVSRYTSL--------ILESSHFTLLR------KIWVVPE 506
            .|..|::|.:.::   .:.:|..::......||        |.:::....:.      |:..:..
 Frog   686 GSTERNIRNNYLEMHSYMVKFNQRSVQDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGS 750

  Fly   507 CPKYYTISY--VMPRDSPWEDAVNALLLRFLNAGLIVKWIQDEKSWVDIKMRSNILEADAESELV 569
            ...:.|..|  .:.:||.|:..|:..:|:....|   :..:.|..|:     :.|...:....:.
 Frog   751 GKVFATTGYGIAIQKDSGWKRQVDLAILQLFGDG---EMEELEALWL-----TGICHNEKNEVMS 807

  Fly   570 RVLTIGDLQLAFYVVIGGNLLAFLGFLAEH-FRWKLQ 605
            ..|.|.::...||::.....|:.:.|:.|| |.|:|:
 Frog   808 SQLDIDNMAGVFYMLAAAMALSLITFIMEHLFFWQLR 844

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir10aNP_001096949.1 Periplasmic_Binding_Protein_Type_2 220..>294 CDD:473866 15/73 (21%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 68/381 (18%)
NMDAR2_C 837..1449 CDD:463148 4/8 (50%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.