DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lint-1 and PKL

DIOPT Version :10

Sequence 1:NP_572692.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_001324293.1 Gene:PKL / 817055 AraportID:AT2G25170 Length:1410 Species:Arabidopsis thaliana


Alignment Length:628 Identity:115/628 - (18%)
Similarity:197/628 - (31%) Gaps:261/628 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 HKERK-YAKFRYYMEKYYVL----PLELKNDIIYCQRSLRDFLKVHALVSEVFDEQADADPVQMR 64
            :|:.| ::....|...:.:|    ||:...|.:        |:.:|.|.:..|..          
plant   455 NKDSKLFSSLTQYSSNHRILLTGTPLQNNLDEL--------FMLMHFLDAGKFGS---------- 501

  Fly    65 RILDELEEEVYEINAEQQF----------------------------LLLRLN-DSLQE------ 94
              |:|.:||..:||.|:|.                            |:||:: .|||:      
plant   502 --LEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAI 564

  Fly    95 ----FSVKLKE-------NNIMF-LPDI-AHEYVSAQVVPLIVDPN--YKIMPQSV-MARDTEEM 143
                :.|..|:       ||||. |..: .|.|:...|.|:|.|.|  :|.:.:|. ..:..::|
plant   565 FTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQLLESCGKLQLLDKM 629

  Fly   144 LIR--------------KHFLLSQDDDSGMPPLKLSELDENIP--------------------LM 174
            :::              :|.|...:|.......:...:|..:.                    .:
plant   630 MVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFL 694

  Fly   175 LAPPVRGLGQQIAAVKP----EPEW-----LQG------------------------DEATVSVP 206
            |:....|||..:|....    :.:|     ||.                        :|..:.: 
plant   695 LSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQL- 758

  Fly   207 PPPPQSKSKLMKGSLDSTPAKRENISRSSPPPLAPITQTVVAELSQVPPSPQAESPPVNFHVVAQ 271
                 :|.|::...|.....|.:||::..   |..|.:....||.........:|..:::...|.
plant   759 -----TKKKMVLEHLVVGKLKTQNINQEE---LDDIIRYGSKELFASEDDEAGKSGKIHYDDAAI 815

  Fly   272 SRKNLQQALRRARKTKQQPRLFDDEED---LEITSLQN----DRNKNRTSDGKGTPPSLEPTNAA 329
            . |.|.:.|..|.:..     .||||:   |:...:.|    |.|:                 ||
plant   816 D-KLLDRDLVEAEEVS-----VDDEEENGFLKAFKVANFEYIDENE-----------------AA 857

  Fly   330 ANQAAKKTIPQMSSQGMAKNNTAKSKNTCRKSSPTPTSSGQSQPAVSSSGSSDDSSAELQQEQQR 394
            |.:|.:.              .|:||                    ||:|:||.:|         
plant   858 ALEAQRV--------------AAESK--------------------SSAGNSDRAS--------- 879

  Fly   395 RVASAAQWRDEPRESRTQPEEYGQETFLGLFELYSPEVLKKLSQRHSKRKRRTVQN--------- 450
                                 |.:|.....|||:..|.|..|.:|  ||.|:.:.:         
plant   880 ---------------------YWEELLKDKFELHQAEELNALGKR--KRSRKQLVSIEEDDLAGL 921

  Fly   451 ---ASGVDFHYGQQLNAVDALVMGVR-GQKKTKEKSEFLLSPT 489
               :|..|..|..:....:|...||: |::..:.|....|.||
plant   922 EDVSSDGDESYEAESTDGEAAGQGVQTGRRPYRRKGRDNLEPT 964

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_572692.1 PHD 548..593 CDD:214584
PKLNP_001324293.1 PHD_SF 78..119 CDD:473978
CD1_tandem 122..196 CDD:349307
CD2_tandem 214..265 CDD:349306
PLN03142 292..>799 CDD:215601 65/372 (17%)
DUF1087 855..917 CDD:461922 25/144 (17%)
CHDII_SANT-like 947..1081 CDD:461920 5/18 (28%)
CHDCT2 1094..>1126 CDD:462358
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.