DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lint-1 and phf21ab

DIOPT Version :9

Sequence 1:NP_001285113.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_021326289.1 Gene:phf21ab / 565544 ZFINID:ZDB-GENE-030131-6456 Length:892 Species:Danio rerio


Alignment Length:707 Identity:126/707 - (17%)
Similarity:225/707 - (31%) Gaps:279/707 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LELKNDIIYCQ-------RSLRDFLKVHALVSEVFDEQADADP--VQMRRILDELEEEVYEINAE 80
            |::..|.::.:       ::|::.|||...|.:....|...||  ..:::.|.||:.::..::.:
Zfish    51 LKVSRDSLFWRTGSMMELQTLQEALKVEIQVHQKLVAQMKQDPQNADLKKQLHELQAKITALSEK 115

  Fly    81 QQFLLLRLNDSL----------QEFSVKLKENNIMF---------LPDIAHE------------Y 114
            |:.::.:|...|          |.|:.......::.         :....|.            .
Zfish   116 QKKVVEQLRKELLVKQEPDLKPQTFAATTDGKTVLLTAACPASQPISGPPHNQGAPQKTLTVTPV 180

  Fly   115 VSAQVVPLIVDPNYKIMPQSVMAR----------------------------------------D 139
            ::|:.:||::......||.|:..:                                        |
Zfish   181 ITAKTLPLVLKAATSTMPASMATQRSAVAMVTAINNPTRPGANSDSQSTPINLQMASKLPNQDTD 245

  Fly   140 TEEMLIRKHFLLSQDDDSGMPPLKLSELDENIPLMLAPPVRGLGQQIAAVKPEPEWLQGDEATVS 204
            ....::.|:.::.|...:...|:|       :|..:.||         .:.|.|.:      ...
Zfish   246 AGTRIVSKNVIVVQATTTSAQPIK-------VPQFVPPP---------RLTPRPTF------QPQ 288

  Fly   205 VPPPPPQSKSKLMKGSLDSTPAKRENISRSSPPPL--APITQTVVAELSQVPPSPQAESPPVNFH 267
            |.|.||             ||. ...|:.:.|||:  ||:.|..:...:::..|..|.:.|:  |
Zfish   289 VRPKPP-------------TPI-NVPIAPAPPPPMVAAPLIQRPLMLTTKLTSSLPASAGPI--H 337

  Fly   268 VV----AQSRKNLQQALRRARKTKQQPRL-FDDEEDLEITSLQNDRNKNRTSDGKGTPPSLEPTN 327
            .|    .|....:.:.......|.|...: ....:.|:|::|.:|.   :|...:|.|       
Zfish   338 QVRIVNGQQCTTIDKTTTTVTGTTQLAGIVISPAQTLQISNLNSDL---KTVKPQGGP------- 392

  Fly   328 AAANQAAKKTIPQMSSQGMAKNNTAKSKNTCRKSSPTPTSSGQSQPAVSSSGSSDDSSAELQQEQ 392
               .|...||.|.                   .|.|.|                           
Zfish   393 ---EQVVIKTPPS-------------------SSPPLP--------------------------- 408

  Fly   393 QRRVASAAQWRDEPRESRTQPEEYGQE-TFLGLFELYSPEVLKKLSQRHSKRKRRTVQNA--SGV 454
                         |..::.:.||..|: .|:....|.:.:.|:::..|..:|||||..|.  ||.
Zfish   409 -------------PPPAKVKREESPQKLAFMVSLGLVTHDHLEEIQSRRQERKRRTTANPVYSGA 460

  Fly   455 DFHYGQQLNAVDALVMGV-RGQKKTKEKSEF---------------------LLSPTEKRLQANS 497
            .|...::.:||..|...: :|.:|.....::                     |||||.. |.|  
Zfish   461 VFEPERKKSAVTYLNTPLHQGTRKRGRPPKYSTTTTTTTSSSTAVPELGCNPLLSPTSS-LPA-- 522

  Fly   498 KRTYTRKSKSPDEISEKSSAGG------------GSGASGTASSSACQHKDGGASKCRKCRECRE 550
                   |.:|    |:...||            .|.:||....    |:|          .|..
Zfish   523 -------SPAP----ERPDTGGFPLSVHPHSVPQPSPSSGDGDI----HED----------FCTV 562

  Fly   551 CKRRVETEAMYCHLCSGLYHMDCHEFTKNRQLMQLQNSR-----CPPCLREKDKLEK 602
            |:|  ..:.:.|..||.:||:||.:       ..|:|..     ||.|   :|::.|
Zfish   563 CRR--SGQLLMCDTCSRVYHLDCLD-------PPLKNIPKGMWICPKC---QDQILK 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_001285113.1 PHD 548..593 CDD:214584 14/49 (29%)
phf21abXP_021326289.1 STAT_alpha 64..>125 CDD:307245 13/60 (22%)
PHD_PHF21A 559..601 CDD:276998 14/50 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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