DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lint-1 and PHF21A

DIOPT Version :9

Sequence 1:NP_001285113.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_011518459.1 Gene:PHF21A / 51317 HGNCID:24156 Length:688 Species:Homo sapiens


Alignment Length:642 Identity:129/642 - (20%)
Similarity:230/642 - (35%) Gaps:171/642 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 RSLRDFLKVHALVSEVFDEQADADP---------VQMRRILDELEEEVYEINAEQQFLLLRLNDS 91
            ::|::.|||...|.:....|...||         ..:::.|.||:.::..::.:|:.::.:|..:
Human     4 QTLQEALKVEIQVHQKLVAQMKQDPQIFFLSNQNADLKKQLHELQAKITALSEKQKRVVEQLRKN 68

  Fly    92 L---QEFSVKLKENNIMFLPDIAHEYVSAQVVPLIVDPNYKIMPQSVMARDTEEMLIRKHFLLSQ 153
            |   ||...|.:   |..||...::..:||..||          |.:..:.      :.|...:|
Human    69 LIVKQEQPDKFQ---IQPLPQSENKLQTAQQQPL----------QQLQQQQ------QYHHHHAQ 114

  Fly   154 DDDSGMPPLKLSE---------LDENIPLMLAPPVRGLGQQIAAVKPEPEWLQGDEATVSVPPPP 209
            ...:..|.|..|:         ..:.:||:|.          ||....|..:.|...|::: ...
Human   115 QSAAASPNLTASQKTVTTASMITTKTLPLVLK----------AATATMPASVVGQRPTIAM-VTA 168

  Fly   210 PQSKSKLMKGSLDSTPAKRENISRSSPPPLAPI----TQTVVAELSQVPPS----PQAESPP--- 263
            ..|:..::...:.:||...:..|:.:.|....:    ..||..::...||.    ||...||   
Human   169 INSQKAVLSTDVQNTPVNLQTSSKVTGPGAEAVQIVAKNTVTLQVQATPPQPIKVPQFIPPPRLT 233

  Fly   264 --VNF------HVVAQSRKNLQQA---LRRARKTKQQPRLFDDEEDLEITSLQNDRNKNRTSDGK 317
              .||      ..|||:...:..|   :..|.:..|:|.:........:.:.||           
Human   234 PRPNFLPQVRPKPVAQNNIPIAPAPPPMLAAPQLIQRPVMLTKFTPTTLPTSQN----------- 287

  Fly   318 GTPPSLEPTNAAANQAA--KKTIP--QMSSQGMAKNNTAKSKNTCRKSSPTPTSSGQSQPAVSSS 378
                |:.|......|.|  .||.|  |::|..:|...|       |.:.|....  .|:|::...
Human   288 ----SIHPVRVVNGQTATIAKTFPMAQLTSIVIATPGT-------RLAGPQTVQ--LSKPSLEKQ 339

  Fly   379 GSSDDSSAELQQEQQRRVASAAQWRDEPRESRTQPEEYGQE-TFLGLFELYSPEVLKKLSQRHSK 442
            .....:..:.:|.:.|.:...|    .|:..|   ||..|: .|:....|.:.:.|:::..:..:
Human   340 TVKSHTETDEKQTESRTITPPA----APKPKR---EENPQKLAFMVSLGLVTHDHLEEIQSKRQE 397

  Fly   443 RKRRTVQNA--SGVDFHYGQQLNAVDAL-------------------VMGVRGQKKTKEKSEFLL 486
            |||||..|.  ||..|...::.:||..|                   |:|......|..:|....
Human   398 RKRRTTANPVYSGAVFEPERKKSAVTYLNSTMHPGTRKRGRPPKYNAVLGFGALTPTSPQSSHPD 462

  Fly   487 SPTEKRLQANSKRTYTRKSK-SPDEISEKSSAGGGSGASGTASSSACQHKDGGASKCRKCRECRE 550
            ||..::    ::.|:|..:. .|..:...:|..|..            |:|       .|..||:
Human   463 SPENEK----TETTFTFPAPVQPVSLPSPTSTDGDI------------HED-------FCSVCRK 504

  Fly   551 CKRRVETEAMYCHLCSGLYHMDCHE-----FTKNRQLMQLQNSRCPPCLREKDKLEK 602
                 ..:.:.|..||.:||:||.:     ..|...:       ||.|..:..|.|:
Human   505 -----SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWI-------CPRCQDQMLKKEE 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_001285113.1 PHD 548..593 CDD:214584 12/49 (24%)
PHF21AXP_011518459.1 ING <382..544 CDD:331088 41/196 (21%)
PHD_PHF21A 498..540 CDD:276998 13/53 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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