DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lint-1 and Chd3

DIOPT Version :9

Sequence 1:NP_001285113.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster


Alignment Length:441 Identity:76/441 - (17%)
Similarity:145/441 - (32%) Gaps:97/441 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 RSLRDFLKVH---ALVSEVFDEQADADPVQMRRILDELEEEVYEINAEQQFLLLRLND-----SL 92
            :.|.:.|:.|   .|.::|...........:|..|..::::.|:....:.|..|....     ||
  Fly   480 KRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKALNQKGGGRVCSL 544

  Fly    93 QEFSVKLKE--NNIMFLPDIAHE----------------------YVSAQVVPLIVDPNYKIMPQ 133
            ....:.|::  |:....|..|.|                      .:|..:..|..| |::::..
  Fly   545 LNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQLKAD-NHRVLLF 608

  Fly   134 SVMARDTEEMLIRKHFLLSQD------DDSGMPPLKLSELD-------ENIPLMLAPPVRGLGQQ 185
            |.|   |:.:.:.:|||..:.      |.|....|:...:|       |:...:|:....|||..
  Fly   609 SQM---TKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGIN 670

  Fly   186 IAAVKP----EPEWLQGDEATVSVPPPPPQSKSKLMKGSLDSTPAKRENISRSSPPPLAPITQTV 246
            :|....    :.:|...::............|.|:|.....:..:..|.|.:.:...:. :|..|
  Fly   671 LATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMM-LTHLV 734

  Fly   247 VAELSQVPPSPQAESPPVNFHVVAQSRKNLQQALRRARKTKQQPRLFDDEEDLEITSLQNDRNKN 311
            |        .|.......||     |:..|:..||..            .|||    .::.:::.
  Fly   735 V--------RPGMGGMTTNF-----SKDELEDILRFG------------TEDL----FKDGKSEA 770

  Fly   312 RTSDGKGTPPSLEPTNAAANQAAKKTIPQMSSQGMAKNNTAKS-------KNTCRKSSP--TPTS 367
            ...|.|.....|:.||....:........:||..:|...|.:.       .|....:.|  ....
  Fly   771 IHYDDKAVADLLDRTNRGIEEKESWANEYLSSFKVASYATKEDHEEHDDYNNDAENTDPFYWENL 835

  Fly   368 SGQSQPAVSSSGSSDDSSAELQQE----QQRRVASAAQWRDE-PRESRTQP 413
            .|:|||.:..........:::..|    :.:|:.....:.:: |..:|..|
  Fly   836 MGKSQPKLPKKQKKQSQQSQVDVESIMGKGKRIRKEIDYSNQYPSPNRATP 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_001285113.1 PHD 548..593 CDD:214584
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007
CHROMO 85..147 CDD:237991
CHROMO 181..233 CDD:214605
SNF2_N 270..561 CDD:278600 14/80 (18%)
DEXDc 288..440 CDD:238005
Helicase_C 585..700 CDD:278689 21/118 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0383
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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