DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lint-1 and AIRE

DIOPT Version :10

Sequence 1:NP_572692.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_000374.1 Gene:AIRE / 326 HGNCID:360 Length:545 Species:Homo sapiens


Alignment Length:328 Identity:62/328 - (18%)
Similarity:103/328 - (31%) Gaps:90/328 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 RKTKQQPRLFDDEEDLEITSLQNDRNKNRTSDGKGTPPSLEPTNAAANQAAKKTIPQMSSQGMAK 348
            |..:.||.|....:|::::..:..|...........||.| ||...|::.|:...|    ..:..
Human    89 RYGRLQPILDSFPKDVDLSQPRKGRKPPAVPKALVPPPRL-PTKRKASEEARAAAP----AALTP 148

  Fly   349 NNTAKSKNTCRKSSP-TPTSSGQSQPAVSSSGSSDDSSAELQQEQQRRVASAAQWRDEPRESRTQ 412
            ..||...:..:...| .|.||.:.|.....:|....|::     .||.||.:         |...
Human   149 RGTASPGSQLKAKPPKKPESSAEQQRLPLGNGIQTMSAS-----VQRAVAMS---------SGDV 199

  Fly   413 PEEYGQETFLGLFELYSPEVLKKLSQRHSKRKRRTVQNASGVDFHYGQQLNAVDALVMGVRGQKK 477
            |...|....:.:.:::.....||..|                                 |.|:..
Human   200 PGARGAVEGILIQQVFESGGSKKCIQ---------------------------------VGGEFY 231

  Fly   478 TKEKSEFLLSPTEKRLQANSKRTYTRKSKSPDEI-----SEKSSAGGGSGASGTASS-------- 529
            |..|.|          .:.|.:...|.|..|..:     ::.::.|||....|...|        
Human   232 TPSKFE----------DSGSGKNKARSSSGPKPLVRAKGAQGAAPGGGEARLGQQGSVPAPLALP 286

  Fly   530 SACQHKDGGASKCRKCRECRECKRRVETEAMYCHLCSGLYHMDCHEFTKNRQLMQLQNS--RCPP 592
            |..|.......:|..||:        ..|.:.|..|...:|:.|    .:..|.::.:.  ||..
Human   287 SDPQLHQKNEDECAVCRD--------GGELICCDGCPRAFHLAC----LSPPLREIPSGTWRCSS 339

  Fly   593 CLR 595
            ||:
Human   340 CLQ 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_572692.1 PHD 548..593 CDD:214584 8/46 (17%)
AIRENP_000374.1 LXXLL motif 1 7..11
HSR 16..103 CDD:460835 4/13 (31%)
LXXLL motif 2 63..67
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 101..178 17/81 (21%)
SAND 197..>250 CDD:470606 12/95 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 234..290 12/65 (18%)
Interaction with histone H3 not methylated at 'Lys-4' 295..298 0/2 (0%)
PHD1_AIRE 298..340 CDD:277014 11/53 (21%)
Interaction with histone H3 not methylated at 'Lys-4' 304..312 1/15 (7%)
Interaction with histone H3 not methylated at 'Lys-4' 331..335 0/3 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 348..382
LXXLL motif 3 414..418
PHD2_AIRE 433..475 CDD:277015
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 489..508
LXXLL motif 4 516..520
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.