DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lint-1 and Phf21b

DIOPT Version :9

Sequence 1:NP_001285113.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_001074635.2 Gene:Phf21b / 271305 MGIID:2443812 Length:487 Species:Mus musculus


Alignment Length:476 Identity:108/476 - (22%)
Similarity:161/476 - (33%) Gaps:154/476 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 LKLSELDENIPLMLAPPVRG-LGQQIAAVKPEPEWLQGDEA---TVSVPPPPPQSKS-------- 214
            ::|....|.:.:.||....| |.:|:...:|....|...:|   |.:||...||..|        
Mouse     1 MELQSRSEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGSTTAVPVTGPQVSSLQRLAGQG 65

  Fly   215 ----------KLMKGSLDSTPAKRENISRSSPPPLAPITQ--TVVAELSQVPPSPQAESPPVNFH 267
                      .|:..||..||      .|..||...|..|  |||:..:..|..|.|.: .|| |
Mouse    66 AAVLPQVRPKTLIPDSLPVTP------GRDRPPKQPPTFQKATVVSIKNPSPALPTANN-TVN-H 122

  Fly   268 VVAQSRKNLQQALRRARKTKQQPRLFDDEEDLEITSLQNDRNKNRTSDGKG-TPPSLEPTNAAAN 331
            |...|.:.  |||               .|...|||       ..:|.|.. ...|..|:| ||.
Mouse   123 VPTPSSQT--QAL---------------TEPTAITS-------PLSSAGVAYAIISTSPSN-AAT 162

  Fly   332 QAAKKTIPQMSSQGMAKNNTAKSKNTCRKSSPTPTSSGQS----QPAVSSSGSSDDSSAELQQEQ 392
            .....|:| ::|.|:             |..|...|:.:.    ||.|.   :..:||||.:...
Mouse   163 ITPSTTVP-VASDGI-------------KVQPLLISADKKVIIIQPQVK---TQPESSAEPEPPT 210

  Fly   393 QRRVASAAQWRDEPRESRTQPEEYGQETFLGLFELYSPEVLKKLSQRHSKRKRRTVQNASGVDFH 457
            :.....|...:::...|:..||:......||   |.:.|.|:::..:..:||||:..|.:     
Mouse   211 EEPSQGAQATKEDQPPSKENPEKIAFMVALG---LVTTEHLEEIQSKRQERKRRSTANPA----- 267

  Fly   458 YGQQLNAVDALVMGVRGQKKTKEK---SEFLLSPTEKRLQANSKRTYTRKSKSPDEISEKSSAGG 519
                          ..|..:|:.|   |.:|.:|.....:||....: :...:.||.        
Mouse   268 --------------YSGFLETERKRLASSYLHNPLFLTARANEDPCW-KGEITHDEF-------- 309

  Fly   520 GSGASGTASSSACQHKDGGASKCRKCRECRECKRRVETEAMYCHLCSGLYHMDCHE---FTKNRQ 581
                                        |..|||....:.  |..|||.||:.|.:   .|..:.
Mouse   310 ----------------------------CAACKRGASLQP--CGTCSGAYHLSCLDPPLKTPPKG 344

  Fly   582 LMQLQNSRCPPCLR---EKDK 599
            |..     ||.|.|   :||:
Mouse   345 LWV-----CPKCQRKALKKDE 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_001285113.1 PHD 548..593 CDD:214584 15/47 (32%)
Phf21bNP_001074635.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 196..229 7/35 (20%)
PHD_SF 309..351 CDD:304600 15/84 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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