DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lint-1 and Chd5

DIOPT Version :9

Sequence 1:NP_001285113.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_006538992.1 Gene:Chd5 / 269610 MGIID:3036258 Length:1955 Species:Mus musculus


Alignment Length:532 Identity:93/532 - (17%)
Similarity:162/532 - (30%) Gaps:183/532 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 LSQDDDSGMPPLKLSELDENIPLMLAPPVRGLGQQIAAVKPEPEWLQGDEATVSVPPPPPQSKSK 215
            :|:::|.|     |...::..|   |.||       :..|.:|:.|:..:::        :.|.|
Mouse    25 MSEEEDGG-----LEGFEDFFP---AEPV-------SLPKKKPKKLKESKSS--------KGKRK 66

  Fly   216 LMKGSLDSTPAKRENISRSSPPPLAPITQTVVAELSQVPPSPQAESPPVNFHVVAQSRKNLQQAL 280
            ..:||.|......|::...|                        ||...::....:.:|.|::..
Mouse    67 KKEGSNDEMSDNEEDLEEKS------------------------ESEGSDYSPTKKKKKKLKEKK 107

  Fly   281 RRARKTKQQPRLFDDEEDLEITSLQNDRNKNR---------------------TSDGKGTPPSLE 324
            .:..|.:::.:..:||:|.:...|:..::..:                     .::.|.....|.
Mouse   108 EKKEKKEKRKKRGEDEDDNDDGGLKEPKSSGQLMAEWGLDDVDYLFSEDDYHTLTNYKAFSQFLR 172

  Fly   325 PTNAAANQAAKKTIPQMSSQGMAKNNTAK----SKNTCRKSSPTPTSSGQSQPAVSSSGSSDDSS 385
            |..|..|       |::....|.....||    |.|...|.|....::.....||.:...:...:
Mouse   173 PLIAKKN-------PKIPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTIAPPLA 230

  Fly   386 AELQQEQQRRVASAAQWRDEPRESRTQPEEYGQETFLGLFELYSPEVLKKLSQRHSKRKRRTVQN 450
            ...||..|....         |:::|:             |...|.|.||.......:|:...:.
Mouse   231 ISPQQVPQTLPI---------RKAKTK-------------EGKGPGVRKKNKGAKDSKKKGRGKR 273

  Fly   451 ASGVDFHYGQQLNAVDALVMGVRGQKKTKEKSEF---------LLSPTEKRLQANSKRTYTRKSK 506
            .:|:.|.:|    .:.....|...::..:|.|:.         :.|.....|...:||  .||.|
Mouse   274 VAGLKFRFG----GISKRKKGSSSEEDEREDSDLDNASIHSSSVRSECSAALGKKNKR--RRKKK 332

  Fly   507 SPD----------EISEKSSAGG---------------------GSGASGTASSSAC-------- 532
            ..|          :..|....||                     .....|..|...|        
Mouse   333 RIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWE 397

  Fly   533 ------QHKDGGASKCRKCRE--------CRECKRRVETEAMYCHLCSGLYHMDCHEFTKNRQLM 583
                  :.::||      |.|        ||.||.  ..|.:.|..|...||:.|    .|..|.
Mouse   398 PKDDDEEEEEGG------CEEEEDDHMEFCRVCKD--GGELLCCDACPSSYHLHC----LNPPLP 450

  Fly   584 QLQNSR--CPPC 593
            ::.|..  ||.|
Mouse   451 EIPNGEWLCPRC 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_001285113.1 PHD 548..593 CDD:214584 15/46 (33%)
Chd5XP_006538992.1 CHDNT 148..203 CDD:369683 11/61 (18%)
PHD1_CHD_II 347..389 CDD:277006 5/41 (12%)
PHD2_CHD_II 420..462 CDD:277007 15/47 (32%)
CD1_tandem_CHD3-4_like 467..546 CDD:349314
CD2_tandem_CHD3-4_like 591..644 CDD:349309
PLN03142 700..>1218 CDD:215601
DUF1087 1300..1359 CDD:368924
DUF1086 1393..1534 CDD:368921
PRK13108 <1535..1687 CDD:237284
CHDCT2 1733..1904 CDD:369684
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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