DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lint-1 and Chd3

DIOPT Version :10

Sequence 1:NP_572692.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_017169944.1 Gene:Chd3 / 216848 MGIID:1344395 Length:2111 Species:Mus musculus


Alignment Length:513 Identity:92/513 - (17%)
Similarity:147/513 - (28%) Gaps:182/513 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 LPDIAHEYVSAQVVPLIVDPNYKIMPQSVMARDTEEMLIRKHFLLSQDDDSGMPPLKLSELDENI 171
            |.|:.|.:.......|   .|||...|.:     ..::.:|:..:.......:...|..|...| 
Mouse   196 LEDVEHVFSEEDYHTL---TNYKAFSQFM-----RPLIAKKNPKIPMSKMMTILGAKWREFSAN- 251

  Fly   172 PLMLAPPVRGLGQQIAAVKPEPEWLQGDEATVSVPPPPPQSKSKLMKGSLDSTPAKRENISRSSP 236
                 .|.:|....:||..........::.:.:|....|                    |:.|.|
Mouse   252 -----NPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATP--------------------IAPSGP 291

  Fly   237 PPLAPITQTVVAELSQVPPSPQAESPPVNFHVVAQSRKNLQQALRRARKTKQQPRLFDDEEDLEI 301
            ||..|           .||:|:.:.||:                |||                  
Mouse   292 PPALP-----------PPPAPEIQPPPI----------------RRA------------------ 311

  Fly   302 TSLQNDRNKNRTSDGKGTPPSLEPTNAAANQAAKKTIPQMSSQGMAKNNTAKSKNTCRKSSPTPT 366
                      :|.:|||      |.:...|::.:  :|.           .:.|...:|.:|...
Mouse   312 ----------KTKEGKG------PGHKRRNKSPR--VPD-----------GRKKLRGKKMAPLKI 347

  Fly   367 S----SGQSQPAVSSSGSSDDS---SAELQQEQQRRVASAAQWRDEPRESRTQPEEYGQETFLGL 424
            .    .|:.:.|.|.:..|::.   .||........|.||:.|.|.|..:               
Mouse   348 KLGLLGGKRKKAGSCAFQSEEGHEPEAEESDLDSGSVHSASGWPDGPVRA--------------- 397

  Fly   425 FELYSPEVLKKLSQRHSKRKRRTVQN---ASGVDFHYGQQLNAVDALVMGVRGQKKTKEKSEFLL 486
                     |||.:....||::.|..   .:|.:...|.:.:..|...:..:|       .|.:|
Mouse   398 ---------KKLKRGRPGRKKKKVLGCPAVTGEEEVDGYETDHQDYCEVCQQG-------GEIIL 446

  Fly   487 SPTEKR------LQANSKRTYTRKSKSPD--------EISEKSSAGGGSGASGTASSSACQHKDG 537
            ..|..|      |.....|....|...|.        |..|:.......|..|..     :.:|.
Mouse   447 CDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEGEK-----EEEDD 506

  Fly   538 GASKCRKCRECRECKRRVETEAMYCHLCSGLYHMDCHEFTKNRQLMQLQNSR--CPPC 593
            ....||.|::        ..|.:.|..|...||:.|    .|..|..:.|..  ||.|
Mouse   507 HMEYCRVCKD--------GGELLCCDACISSYHIHC----LNPPLPDIPNGEWLCPRC 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_572692.1 PHD 548..593 CDD:214584 11/46 (24%)
Chd3XP_017169944.1 CHDNT 200..253 CDD:462357 10/66 (15%)
PHD1_CHD_II 434..476 CDD:277006 9/48 (19%)
PHD2_CHD_II 510..552 CDD:277007 14/53 (26%)
CD1_tandem_CHD3-4_like 557..635 CDD:349314
CD2_tandem_CHD3-4_like 680..734 CDD:349309
PLN03142 771..>1325 CDD:215601
DEXHc_CHD3 788..1019 CDD:350813
DUF1087 <1366..1409 CDD:461922
CHDII_SANT-like 1430..1569 CDD:461920
PHA03169 1589..>1759 CDD:223003
CHDCT2 1791..1917 CDD:462358
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.