DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lint-1 and Chd3

DIOPT Version :9

Sequence 1:NP_001285113.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_017169944.1 Gene:Chd3 / 216848 MGIID:1344395 Length:2111 Species:Mus musculus


Alignment Length:513 Identity:92/513 - (17%)
Similarity:147/513 - (28%) Gaps:182/513 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 LPDIAHEYVSAQVVPLIVDPNYKIMPQSVMARDTEEMLIRKHFLLSQDDDSGMPPLKLSELDENI 171
            |.|:.|.:.......|   .|||...|.:     ..::.:|:..:.......:...|..|...| 
Mouse   196 LEDVEHVFSEEDYHTL---TNYKAFSQFM-----RPLIAKKNPKIPMSKMMTILGAKWREFSAN- 251

  Fly   172 PLMLAPPVRGLGQQIAAVKPEPEWLQGDEATVSVPPPPPQSKSKLMKGSLDSTPAKRENISRSSP 236
                 .|.:|....:||..........::.:.:|....|                    |:.|.|
Mouse   252 -----NPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATP--------------------IAPSGP 291

  Fly   237 PPLAPITQTVVAELSQVPPSPQAESPPVNFHVVAQSRKNLQQALRRARKTKQQPRLFDDEEDLEI 301
            ||..|           .||:|:.:.||:                |||                  
Mouse   292 PPALP-----------PPPAPEIQPPPI----------------RRA------------------ 311

  Fly   302 TSLQNDRNKNRTSDGKGTPPSLEPTNAAANQAAKKTIPQMSSQGMAKNNTAKSKNTCRKSSPTPT 366
                      :|.:|||      |.:...|::.:  :|.           .:.|...:|.:|...
Mouse   312 ----------KTKEGKG------PGHKRRNKSPR--VPD-----------GRKKLRGKKMAPLKI 347

  Fly   367 S----SGQSQPAVSSSGSSDDS---SAELQQEQQRRVASAAQWRDEPRESRTQPEEYGQETFLGL 424
            .    .|:.:.|.|.:..|::.   .||........|.||:.|.|.|..:               
Mouse   348 KLGLLGGKRKKAGSCAFQSEEGHEPEAEESDLDSGSVHSASGWPDGPVRA--------------- 397

  Fly   425 FELYSPEVLKKLSQRHSKRKRRTVQN---ASGVDFHYGQQLNAVDALVMGVRGQKKTKEKSEFLL 486
                     |||.:....||::.|..   .:|.:...|.:.:..|...:..:|       .|.:|
Mouse   398 ---------KKLKRGRPGRKKKKVLGCPAVTGEEEVDGYETDHQDYCEVCQQG-------GEIIL 446

  Fly   487 SPTEKR------LQANSKRTYTRKSKSPD--------EISEKSSAGGGSGASGTASSSACQHKDG 537
            ..|..|      |.....|....|...|.        |..|:.......|..|..     :.:|.
Mouse   447 CDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEGEK-----EEEDD 506

  Fly   538 GASKCRKCRECRECKRRVETEAMYCHLCSGLYHMDCHEFTKNRQLMQLQNSR--CPPC 593
            ....||.|::        ..|.:.|..|...||:.|    .|..|..:.|..  ||.|
Mouse   507 HMEYCRVCKD--------GGELLCCDACISSYHIHC----LNPPLPDIPNGEWLCPRC 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_001285113.1 PHD 548..593 CDD:214584 11/46 (24%)
Chd3XP_017169944.1 CHDNT 200..253 CDD:369683 10/66 (15%)
PHD1_CHD_II 434..476 CDD:277006 9/48 (19%)
PHD2_CHD_II 510..552 CDD:277007 14/53 (26%)
CD1_tandem_CHD3-4_like 557..635 CDD:349314
CD2_tandem_CHD3-4_like 680..734 CDD:349309
PLN03142 771..>1325 CDD:215601
DEXHc_CHD3 788..1019 CDD:350813
DUF1087 <1364..1407 CDD:368924
DUF1086 1430..1569 CDD:368921
PHA03169 1589..>1759 CDD:223003
CHDCT2 1790..>1917 CDD:369684
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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