DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lint-1 and Phf21a

DIOPT Version :9

Sequence 1:NP_001285113.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_011237664.1 Gene:Phf21a / 192285 MGIID:2384756 Length:695 Species:Mus musculus


Alignment Length:642 Identity:134/642 - (20%)
Similarity:233/642 - (36%) Gaps:163/642 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 RSLRDFLKVHALVSEVFDEQADADP---------VQMRRILDELEEEVYEINAEQQFLLLRLNDS 91
            ::|::.|||...|.:....|...||         ..:::.|.||:.::..::.:|:.::.:|..:
Mouse     4 QTLQEALKVEIQVHQKLVAQMKQDPQIFFLSNQNADLKKQLHELQAKITALSEKQKRVVEQLRKN 68

  Fly    92 L---QEFSVKLKENNIMFLPDIAHEYVSAQVVPLIVDPNYKIMPQSVMARDTEEMLIRKHFLLSQ 153
            |   ||...|.:   |..|....::..:||..||  .|..:..||....:..::   ::|   :|
Mouse    69 LIVKQEQPDKFQ---IQPLSQSENKLQTAQQQPL--QPLQQQQPQQPQQQQQQQ---QQH---AQ 122

  Fly   154 DDDSGMPPLKLSE---------LDENIPLMLAPPVRGLGQQIAAVKPEPEWLQGDEATVSVPPPP 209
            ...:..|.|..|:         ..:.:||:|.          ||....|..:.|...|::: ...
Mouse   123 QSAAAPPSLTASQKTVTTASMITTKTLPLVLK----------AATATMPASVVGQRPTIAM-VTA 176

  Fly   210 PQSKSKLMKGSLDSTPAKRENISRSSPPPLAPI----TQTVVAELSQVPPS----PQAESPP--- 263
            ..|:..::...:.:||...:..|:.:.|....:    ..||..::...||.    ||...||   
Mouse   177 INSQKAVLSTDVQNTPVNLQTSSKVTGPGAEAVQIVAKNTVTLQVQATPPQPIKVPQFIPPPRLT 241

  Fly   264 --VNF------HVVAQSRKNLQQA---LRRARKTKQQPRLFDDEEDLEITSLQNDRNKNRTSDGK 317
              .||      ..|||:...:..|   :..|.:..|:|.:........:.:.||           
Mouse   242 PRPNFLPQVRPKPVAQNNIPIAPAPPPMLAAPQLIQRPVMLTKFTPTTLPTSQN----------- 295

  Fly   318 GTPPSLEPTNAAANQAA--KKTIP--QMSSQGMAKNNTAKSKNTCRKSSPTPTSSGQSQPAVSSS 378
                |:.|......|.|  .||.|  |::|..:|...|         ..|.|.:...|:|::...
Mouse   296 ----SIHPVRVVNGQTATIAKTFPMAQLTSIVIATPGT---------RLPGPQTVQLSKPSLEKQ 347

  Fly   379 GSSDDSSAELQQEQQRRVASAAQWRDEPRESRTQPEEYGQE-TFLGLFELYSPEVLKKLSQRHSK 442
            .......||.:|.:.|.|...|    .|:..|   ||..|: .|:....|.:.:.|:::..:..:
Mouse   348 TVKSHPEAEEKQAESRTVTPPA----APKPKR---EENPQKLAFMVSLGLVTHDHLEEIQSKRQE 405

  Fly   443 RKRRTVQNA--SGVDFHYGQQLNAVDAL-------------------VMGVRGQKKTKEKSEFLL 486
            |||||..|.  ||..|...::.:||..|                   |:|......|...|....
Mouse   406 RKRRTTANPVYSGAVFEPERKKSAVTYLNSTMHPGTRKRGRPPKYNAVLGFGALTPTSPPSSHPD 470

  Fly   487 SPTEKRLQANSKRTYTRKSK-SPDEISEKSSAGGGSGASGTASSSACQHKDGGASKCRKCRECRE 550
            ||..::    ::.|:|..:. .|..:...:|..|..            |:|       .|..||:
Mouse   471 SPENEK----TETTFTFPAPVQPVSLPSPTSTDGDI------------HED-------FCSVCRK 512

  Fly   551 CKRRVETEAMYCHLCSGLYHMDCHE-----FTKNRQLMQLQNSRCPPCLREKDKLEK 602
                 ..:.:.|..||.:||:||.|     ..|...:       ||.|..:..|.|:
Mouse   513 -----SGQLLMCDTCSRVYHLDCLEPPLKTIPKGMWI-------CPRCQDQMLKKEE 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_001285113.1 PHD 548..593 CDD:214584 13/49 (27%)
Phf21aXP_011237664.1 PHD_PHF21A 506..548 CDD:276998 14/53 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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