DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lint-1 and phf-32

DIOPT Version :9

Sequence 1:NP_001285113.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_001355360.1 Gene:phf-32 / 184600 WormBaseID:WBGene00008902 Length:208 Species:Caenorhabditis elegans


Alignment Length:80 Identity:20/80 - (25%)
Similarity:27/80 - (33%) Gaps:28/80 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   525 GTASSSACQHKDG------GASKCRKCRE------CRECKRRVETEAMYCHLCSGLYHMD----- 572
            |..||||....|.      ..:||..|.:      |..|      .|.:...|.||..:.     
 Worm     9 GECSSSATSEPDDQNWLWPEQNKCGMCADGGTIIWCETC------PASFHAFCLGLKTIPEPEKD 67

  Fly   573 ---CH--EFTKNRQL 582
               ||  :.:||.:|
 Worm    68 TFICHRDKISKNNRL 82

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_001285113.1 PHD 548..593 CDD:214584 11/45 (24%)
phf-32NP_001355360.1 PHD_SF 32..71 CDD:389947 8/44 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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