DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lint-1 and PHF21B

DIOPT Version :9

Sequence 1:NP_001285113.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_612424.1 Gene:PHF21B / 112885 HGNCID:25161 Length:531 Species:Homo sapiens


Alignment Length:441 Identity:96/441 - (21%)
Similarity:146/441 - (33%) Gaps:148/441 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 APPVRG--------LGQQIAAVKPE--PEWLQGDEATVSV----PP--PPPQSKSKL--MKGSLD 222
            |.||.|        |..|.|||.|:  |:.|..|...|:.    ||  ||...|:.:  :|....
Human    47 AVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVVSVKNPSP 111

  Fly   223 STPAKRENISR-----SSPPPLA-------PITQTVVAE--LSQVPPSPQAESPPVNFHVVAQSR 273
            :.|.....:|.     |.|..||       |::...||.  :|..|.:..|.:|.....||:.|.
Human   112 ALPTANNTVSHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTSPSNAAAMAPSTAVSVVSDSI 176

  Fly   274 KNLQQALRRARKTKQQPRLFDDEE------DLEITSLQNDRNKNRTSDGKGTP--PSLEPTNAAA 330
            |  .|.|..:...|..|||.....      .|..:||..            ||  |||.|:....
Human   177 K--VQPLLISADNKPPPRLLSSPHPATHHCPLHPSSLPL------------TPPSPSLSPSPLHG 227

  Fly   331 NQAAKKTIPQMSSQGMAKNNTAKSKNTCRKSSPTPTSSGQSQPAVSSSGSSDDSSAELQQEQQRR 395
            ........||:.:|                    |.|:.:|:|..               |:..:
Human   228 IFQVIIIQPQVQTQ--------------------PESTAESRPPT---------------EEPSQ 257

  Fly   396 VASAAQWRDEPR-ESRTQPEEYGQETFLGLFELYSPEVLKKLSQRHSKRKRRTVQNASGVDFHYG 459
            .|.|.:.:.|.| .::..||:......||   |.:.|.|:::..:..:||||:..|.:       
Human   258 GAQATKKKKEDRPPTQENPEKIAFMVALG---LVTTEHLEEIQSKRQERKRRSTANPA------- 312

  Fly   460 QQLNAVDALVMGVRGQKKTKEKSEFLLSPTEKRLQANSKRTYTRKSKSPDEISEKSSAGGGSGAS 524
                     ..|:...::.:..|.:|.:|.....:||....:      .:||:            
Human   313 ---------YSGLLETERKRLASNYLNNPLFLTARANEDPCW------KNEIT------------ 350

  Fly   525 GTASSSACQHKDGGASKCRKCRECRECKRRVETEAMYCHLCSGLYHMDCHE 575
                     |.:          .|..|||....:.  |..|.|.||:.|.|
Human   351 ---------HDE----------HCAACKRGANLQP--CGTCPGAYHLSCLE 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_001285113.1 PHD 548..593 CDD:214584 11/28 (39%)
PHF21BNP_612424.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 79..99 6/19 (32%)
Nuc_recep-AF1 108..193 CDD:288658 21/86 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 184..222 12/49 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 238..277 10/73 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..314 5/34 (15%)
PHD_PHF21B 354..396 CDD:276999 11/29 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 507..531
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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