DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lint-1 and Chd4

DIOPT Version :10

Sequence 1:NP_572692.1 Gene:Lint-1 / 32055 FlyBaseID:FBgn0030274 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_001390521.1 Gene:Chd4 / 107932 MGIID:1344380 Length:1922 Species:Mus musculus


Alignment Length:499 Identity:89/499 - (17%)
Similarity:152/499 - (30%) Gaps:168/499 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 GLGQQIAAVKPEPEWLQGDEATV------SVPPPPPQSKSKLMKGSLDSTPAKRENISRSSPPPL 239
            |||      .|.|.....:|..:      |:|||.|:::..           ..|::|.:..|.|
Mouse     4 GLG------SPSPCSAGSEEEDMDALLNNSLPPPHPENEED-----------PDEDLSEAETPKL 51

  Fly   240 APITQTVVAELSQVPPSPQAESPPVNFHVVAQSRKNLQQALRRARK----TKQQPRLFDDEEDLE 300
                     :..:.|..|:....|       :|::..::.|...|:    :.:.|...::||:: 
Mouse    52 ---------KKKKKPKKPRDPKIP-------KSKRQKKERLLLCRQLGDSSGEGPEFVEEEEEV- 99

  Fly   301 ITSLQNDRNKNRTSDGKGTPPSLEPTNAAANQAAKKTIPQMSSQGMAKNNTAKSKNTCRKSSPTP 365
              :|::|      |:|....|         .:..||.:      |..|...:|||   ||..   
Mouse   100 --ALRSD------SEGSDYTP---------GKKKKKKL------GPKKEKKSKSK---RKEE--- 135

  Fly   366 TSSGQSQPAVSSSGSSDDSSAELQQEQQRRVASAAQWRDEPRESRTQPEEYGQETFLGLFELYSP 430
                :.:...........|||:|.::          |..|..:.....|:|...|....|..:..
Mouse   136 ----EEEEDEDDDSKEPKSSAQLLED----------WGMEDIDHVFSEEDYRTLTNYKAFSQFVR 186

  Fly   431 EVLKKLSQRHSKRKRRTVQNASGVDF--------HYGQQLNAVDALVMGV--------------- 472
            .::...:.:.:..|...|..|...:|        ..|..:.|..|..:.|               
Mouse   187 PLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVAPPPP 251

  Fly   473 -----RGQKKTKEKSEFLLSPTEKRLQANSKRTYTRKSKSPDEISEKSSAGGGSGASGTASSS-- 530
                 ..:.||||..    .|..:|....|.|....|...|.:::......||.|:....|||  
Mouse   252 PVEVPIRKAKTKEGK----GPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKRSSSED 312

  Fly   531 ---------------ACQHKDGGASKCRKCRE----------------------------CRECK 552
                           :....||..|:..:.|:                            |..|:
Mouse   313 DDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTAKKKKKGEEEVTAVDGYETDHQDYCEVCQ 377

  Fly   553 RRVETEAMYCHLCSGLYHMDCHEFTKNRQLMQLQNSRCPPCLRE 596
            :  ..|.:.|..|...|||.|  ...:.:........||.|.:|
Mouse   378 Q--GGEIILCDTCPRAYHMVC--LDPDMEKAPEGKWSCPHCEKE 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lint-1NP_572692.1 PHD 548..593 CDD:214584 11/44 (25%)
Chd4NP_001390521.1 CHDNT 164..217 CDD:462357 8/52 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 243..360 20/120 (17%)
KIKL. /evidence=ECO:0000250|UniProtKB:Q14839 295..298 0/2 (0%)
PHD1_CHD_II 372..414 CDD:277006 11/45 (24%)
PHD2_CHD_II 451..493 CDD:277007
CD1_tandem_CHD3-4_like 498..576 CDD:349314
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 510..537
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 578..603
CD2_tandem_CHD3-4_like 619..673 CDD:349309
PLN03142 724..>1281 CDD:215601
DEXHc_CHD4 726..957 CDD:350814
DEAH box 873..876
DUF1087 1302..1345 CDD:461922
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1344..1401
CHDII_SANT-like 1381..1521 CDD:461920
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1525..1701
Required for interaction with PCNT. /evidence=ECO:0000250 1577..1922
CHDCT2 1736..1881 CDD:462358
Blue background indicates that the domain is not in the aligned region.

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