DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3 and RPT3

DIOPT Version :9

Sequence 1:NP_001285108.1 Gene:Rpt3 / 32047 FlyBaseID:FBgn0028686 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_200637.1 Gene:RPT3 / 835941 AraportID:AT5G58290 Length:408 Species:Arabidopsis thaliana


Alignment Length:397 Identity:328/397 - (82%)
Similarity:358/397 - (90%) Gaps:0/397 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 DLKLKDAHSSLDELDMEDLYVRYKKLQKTLEFIEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVP 81
            |.|...|...|...|.||||.|.|.|::.|||.::||||:||||:|||:|.|.||||||||||||
plant    12 DPKASPALMDLSTADEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVP 76

  Fly    82 LVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSI 146
            ||||||:|.||||.|||||||||||||||||||:|||||||||||||:|||||||||||||||||
plant    77 LVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSI 141

  Fly   147 SMLQPDEKPDVSYADIGGMDMQKQEIREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLA 211
            |:|...|||||||.||||.|:|||||||||||||||.|||||||||||||||:|||||.||||||
plant   142 SLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 206

  Fly   212 KAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGA 276
            ||||:||||:||||||||||||||||||||||||||||||||||||||||:|||||.||||||||
plant   207 KAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGA 271

  Fly   277 DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 341
            ||||||||:||||||||||||.||||||||||||||||||||||||||||||||||||||||||.
plant   272 DREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ 336

  Fly   342 TITSKMNLSEDVDLEEFVARPDKISGADINAICQEAGMHAVRENRYIVLAKDFEKGYKNNIKKDE 406
            ..|||||||::||||::|:||||||.|:|.||||||||||||:|||::|.|||||||:.|:||.:
plant   337 VCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPD 401

  Fly   407 QEHEFYK 413
            .:.||||
plant   402 TDFEFYK 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3NP_001285108.1 PTZ00454 22..413 CDD:240423 324/390 (83%)
AAA 197..330 CDD:278434 124/132 (94%)
RPT3NP_200637.1 PTZ00454 15..408 CDD:240423 324/392 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 252 1.000 Domainoid score I519
eggNOG 1 0.900 - - E1_COG1222
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4744
Inparanoid 1 1.050 654 1.000 Inparanoid score I165
OMA 1 1.010 - - QHG54142
OrthoDB 1 1.010 - - D571919at2759
OrthoFinder 1 1.000 - - FOG0004043
OrthoInspector 1 1.000 - - otm3503
orthoMCL 1 0.900 - - OOG6_101965
Panther 1 1.100 - - LDO PTHR23073
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2788
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.930

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