DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3 and PSMC5

DIOPT Version :10

Sequence 1:NP_572686.1 Gene:Rpt3 / 32047 FlyBaseID:FBgn0028686 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_002796.4 Gene:PSMC5 / 5705 HGNCID:9552 Length:406 Species:Homo sapiens


Alignment Length:412 Identity:174/412 - (42%)
Similarity:253/412 - (61%) Gaps:31/412 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 PEKDELSDLKLKDAHSSLDELDMEDLYVRYKKLQKTLEFIEVQEEYIKDEQRNLKKEYLHAQ--- 71
            ||:.||.:.|   |.|.|              .|..|..||..:..:.|:.:||::  |.||   
Human     6 PEQMELEEGK---AGSGL--------------RQYYLSKIEELQLIVNDKSQNLRR--LQAQRNE 51

  Fly    72 ---------EEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVAL 127
                     ||::.:|.....:|:.:.|:|:...:|.......:.|.:...||...:.|:..|||
Human    52 LNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVAL 116

  Fly   128 HKHSNALVDVLPPEADSSISMLQPDEKPDVSYADIGGMDMQKQEIREAVELPLTHFELYKQIGID 192
            ...|..|..:||.:.|..:|::..::.||.:|..|||:|.|.:||:|.:|||:.|.||::.:||.
Human   117 RNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 181

  Fly   193 PPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAII 257
            .|:|||:|||||.|||:||:||||||..:||||.|||.|||::|||.||||::|.:|:|:||:||
Human   182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 246

  Fly   258 FIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRL 322
            |:||||:|.:.|.:..:|.|.||||.:||||||:|||:.|.|:||||||||.|.||.|||||||:
Human   247 FMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRI 311

  Fly   323 DRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFVARPDKISGADINAICQEAGMHAVRENRY 387
            |||||||.|:...:..:....:.||||:..::|.:........|||::..:|.||||:|:||.|.
Human   312 DRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRV 376

  Fly   388 IVLAKDFEKGYKNNIKKDEQEH 409
            .|..:|||......::||.:::
Human   377 HVTQEDFEMAVAKVMQKDSEKN 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3NP_572686.1 PTZ00454 22..413 CDD:240423 169/400 (42%)
PSMC5NP_002796.4 PRK03992 24..400 CDD:179699 165/377 (44%)
May mediate interaction with PRPF9. /evidence=ECO:0000250|UniProtKB:P62196 186..406 115/213 (54%)

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