DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3 and psmc4

DIOPT Version :9

Sequence 1:NP_001285108.1 Gene:Rpt3 / 32047 FlyBaseID:FBgn0028686 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_001008010.1 Gene:psmc4 / 493372 XenbaseID:XB-GENE-5855370 Length:420 Species:Xenopus tropicalis


Alignment Length:383 Identity:352/383 - (91%)
Similarity:369/383 - (96%) Gaps:0/383 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 DMEDLYVRYKKLQKTLEFIEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNT 95
            |:||||.||||||:.|||:|||||||||||:|||||:||||||||||||:|||||||||||||||
 Frog    38 DLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNT 102

  Fly    96 GIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQPDEKPDVSYA 160
            .|||||||||||||||||||||||||:||||||||||||||||||||||||.||..|:||||.|:
 Frog   103 AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVLYS 167

  Fly   161 DIGGMDMQKQEIREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRV 225
            ||||||:||||:||||||||||||||||||||||||||||||||||||||||||||||||:||||
 Frog   168 DIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRV 232

  Fly   226 VGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ 290
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
 Frog   233 VGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ 297

  Fly   291 MDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDL 355
            ||||||..||||||||||||||||||||||||||||||||||||||||:||||||||||||:|||
 Frog   298 MDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDL 362

  Fly   356 EEFVARPDKISGADINAICQEAGMHAVRENRYIVLAKDFEKGYKNNIKKDEQEHEFYK 413
            |::|||||||||||||:||||.||.||||||||||||||||.||..||||||||||||
 Frog   363 EDYVARPDKISGADINSICQEGGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3NP_001285108.1 PTZ00454 22..413 CDD:240423 350/381 (92%)
AAA 197..330 CDD:278434 129/132 (98%)
psmc4NP_001008010.1 PTZ00454 36..420 CDD:240423 350/381 (92%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 262 1.000 Domainoid score I1910
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4744
Inparanoid 1 1.050 703 1.000 Inparanoid score I651
OMA 1 1.010 - - QHG54142
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 1 1.000 - - FOG0004043
OrthoInspector 1 1.000 - - oto102782
Panther 1 1.100 - - LDO PTHR23073
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1000
SonicParanoid 1 1.000 - - X2788
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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