DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3 and psmc3

DIOPT Version :10

Sequence 1:NP_572686.1 Gene:Rpt3 / 32047 FlyBaseID:FBgn0028686 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_001006786.1 Gene:psmc3 / 448481 XenbaseID:XB-GENE-1009848 Length:423 Species:Xenopus tropicalis


Alignment Length:422 Identity:167/422 - (39%)
Similarity:253/422 - (59%) Gaps:28/422 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 EKDELSDLKLKDAHSSLDELDMEDLYVRYKKLQKTLEFIEVQEEYIKDEQRNLKKEYLHAQEEVK 75
            |.|.|.:..||        :..|::..|.:.|...::.::.:...:..|.:.::.:.....|::|
 Frog     9 EADGLGEEVLK--------MSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIK 65

  Fly    76 RIQSVPLVIGQFLEAVD-----------------QNTG---IVGSTTGSNYYVRILSTIDRELLK 120
            ..:::|.::...:|.:|                 |..|   ::.::|...|::.::..:|.|.||
 Frog    66 VNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLK 130

  Fly   121 PSASVALHKHSNALVDVLPPEADSSISMLQPDEKPDVSYADIGGMDMQKQEIREAVELPLTHFEL 185
            |...|.::|.|..:::.||.|.||.:..::.||:|...|:||||:|.|.||:.||:.||:.|.|.
 Frog   131 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEK 195

  Fly   186 YKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAK 250
            ::.:||.||:|||||||||.|||:||:|.|..|.|:|:::.|.:.||.::|:|.::|||.|.|||
 Frog   196 FENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAK 260

  Fly   251 ENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 315
            |.||:||||||:|||.|||||::...||||||.:||||||:|||...|.||||.||||.|.||||
 Frog   261 EKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPA 325

  Fly   316 LLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFVARPDKISGADINAICQEAGMH 380
            |||.||||||||||:|:...:..:....:.|||:|.||:.||.....|..:||...|:|.||||.
 Frog   326 LLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMI 390

  Fly   381 AVRENRYIVLAKDFEKGYKNNIKKDEQEHEFY 412
            |:|.....:..:|:.:|......|.:...::|
 Frog   391 ALRRGATELTHEDYMEGILEVQAKKKANLQYY 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3NP_572686.1 PTZ00454 22..413 CDD:240423 162/411 (39%)
psmc3NP_001006786.1 PRK03992 23..416 CDD:179699 161/392 (41%)

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