DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3 and Rpt6R

DIOPT Version :9

Sequence 1:NP_001285108.1 Gene:Rpt3 / 32047 FlyBaseID:FBgn0028686 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_651811.1 Gene:Rpt6R / 43635 FlyBaseID:FBgn0039788 Length:399 Species:Drosophila melanogaster


Alignment Length:412 Identity:178/412 - (43%)
Similarity:257/412 - (62%) Gaps:20/412 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 DVLIPEKDELSDLKLKDAHSSLDELDMEDLYVRYKKLQKTLEFIEVQEEYIKDEQRNLKKEYLHA 70
            ||.|||..|       ..||...: .:.:|.....:.||.|..::.|.     .:.|||...|  
  Fly     4 DVGIPEGSE-------GFHSYYTQ-KISELQFTVNERQKNLLRLQAQR-----NELNLKVRLL-- 53

  Fly    71 QEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALV 135
            :||::.:|.....|.:.::.:|:|..:|.......|.|.:..||:.:.:.||:.|||...|..|.
  Fly    54 REELQLLQEQGSYIAEVVKPMDKNKVLVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLH 118

  Fly   136 DVLPPEADSSISMLQPDEKPDVSYADIGGMDMQKQEIREAVELPLTHFELYKQIGIDPPRGVLMY 200
            .:||.:.|..:|::..::.||.:|..:||:|.|.|||:|.:|||:.|.||:..:||..|:|||:|
  Fly   119 KILPNKVDPLVSLMLVEKVPDSTYEMVGGLDKQIQEIKEVIELPVKHPELFDALGITQPKGVLLY 183

  Fly   201 GPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAI 265
            ||||.|||:||:||||||..:||||.|||.|||::|||.||||::|.:|:|:||:|||:||||:|
  Fly   184 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 248

  Fly   266 ATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 330
            .:.|.:..|| |.||||.:||||||:|||:.|.|:||||||||.|.||.|||||||:|||||||.
  Fly   249 GSARLETGTG-DSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVLDQALLRPGRIDRKIEFPP 312

  Fly   331 PDRRQKRLVFSTITSKMNLSEDVDLEEFVARPDKISGADINAICQEAGMHAVRENRYIVLAKDFE 395
            |:...:..:....:.||||:..::|.:........|||::..:|.||||:|:||.|..|..:|||
  Fly   313 PNEEARLDILKIHSRKMNLTRGINLRKIAEEMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 377

  Fly   396 KGYKNNIKKDEQEH----EFYK 413
            ......:.||.:::    :|:|
  Fly   378 MAVSKVMMKDSEKNMSIRKFWK 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3NP_001285108.1 PTZ00454 22..413 CDD:240423 171/394 (43%)
AAA 197..330 CDD:278434 91/132 (69%)
Rpt6RNP_651811.1 RPT1 3..396 CDD:224143 176/407 (43%)
AAA 180..311 CDD:278434 90/131 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445443
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23073
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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