DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3 and psmc2

DIOPT Version :10

Sequence 1:NP_572686.1 Gene:Rpt3 / 32047 FlyBaseID:FBgn0028686 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_957260.1 Gene:psmc2 / 393941 ZFINID:ZDB-GENE-040426-1327 Length:433 Species:Danio rerio


Alignment Length:416 Identity:164/416 - (39%)
Similarity:230/416 - (55%) Gaps:66/416 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 EYIKDEQRNLKKEY-----LHAQEE--------------VKRIQSVPLVIGQFLEAVDQNTGIVG 99
            :|:..|||.:|:|.     :.|.:|              .::|:.|...|.|.|:.:::.|||..
Zfish     3 DYLGTEQRKVKEEEKEDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKE 67

  Fly   100 STTG--------------------SNYYVRILSTIDRELLKPSASVALHKHSNALVDV------- 137
            |.||                    .....|....|:.:...|...:.:.:.:..:||:       
Zfish    68 SDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPT 132

  Fly   138 --------------------LPPEADSSISMLQPDEKPDVSYADIGGMDMQKQEIREAVELPLTH 182
                                |||:.|.:::|:|.:|||||:|:|:||...|.:::||.||.||.|
Zfish   133 DIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLH 197

  Fly   183 FELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFR 247
            .|.:..:||:||:|||::||||.|||:.|:|||:.|.|.||||:|||.||||:|||.||||::|.
Zfish   198 PERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFE 262

  Fly   248 LAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 312
            :|:.....:||.||||||...|||...|.|.||||.:|||:||:||||...|:||:|||||.|||
Zfish   263 MARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

  Fly   313 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFVARPDKISGADINAICQEA 377
            ||||:|||||||||||.|||...:..:|......|::..|:..|.........:||:|.::|.||
Zfish   328 DPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEA 392

  Fly   378 GMHAVRENRYIVLAKDFEKGYKNNIK 403
            ||.|:|..|.|...|||.:.....||
Zfish   393 GMFAIRARRKIATEKDFLEAVNKVIK 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3NP_572686.1 PTZ00454 22..413 CDD:240423 164/416 (39%)
psmc2NP_957260.1 PRK03992 44..430 CDD:179699 156/375 (42%)

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