DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3 and psmc4

DIOPT Version :9

Sequence 1:NP_001285108.1 Gene:Rpt3 / 32047 FlyBaseID:FBgn0028686 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_956044.2 Gene:psmc4 / 326884 ZFINID:ZDB-GENE-030131-5083 Length:418 Species:Danio rerio


Alignment Length:383 Identity:353/383 - (92%)
Similarity:369/383 - (96%) Gaps:0/383 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 DMEDLYVRYKKLQKTLEFIEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNT 95
            |:||||..|||||:.|||:|||||||||||:|||||:||||||||||||:|||||||||||||||
Zfish    36 DLEDLYSIYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNT 100

  Fly    96 GIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQPDEKPDVSYA 160
            .|||||||||||||||||||||||||:||||||||||||||||||||||||.||..|:||||.|:
Zfish   101 AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVLYS 165

  Fly   161 DIGGMDMQKQEIREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRV 225
            ||||||:||||:||||||||||||||||||||||||||||||||||||||||||||||||:||||
Zfish   166 DIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRV 230

  Fly   226 VGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ 290
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Zfish   231 VGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ 295

  Fly   291 MDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDL 355
            ||||||..|||||||||||||||||||||||||||||||||||||||||||||||||||||:|||
Zfish   296 MDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEEVDL 360

  Fly   356 EEFVARPDKISGADINAICQEAGMHAVRENRYIVLAKDFEKGYKNNIKKDEQEHEFYK 413
            |::|||||||||||||:|||||||.||||||||||||||||.||..||||||||||||
Zfish   361 EDYVARPDKISGADINSICQEAGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3NP_001285108.1 PTZ00454 22..413 CDD:240423 351/381 (92%)
AAA 197..330 CDD:278434 129/132 (98%)
psmc4NP_956044.2 PTZ00454 34..418 CDD:240423 351/381 (92%)
AAA 202..335 CDD:278434 129/132 (98%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578385
Domainoid 1 1.000 262 1.000 Domainoid score I1906
eggNOG 1 0.900 - - E1_COG1222
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4744
Inparanoid 1 1.050 702 1.000 Inparanoid score I646
OMA 1 1.010 - - QHG54142
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 1 1.000 - - FOG0004043
OrthoInspector 1 1.000 - - oto38922
orthoMCL 1 0.900 - - OOG6_101965
Panther 1 1.100 - - LDO PTHR23073
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1000
SonicParanoid 1 1.000 - - X2788
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

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