DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3 and Psmc6

DIOPT Version :10

Sequence 1:NP_572686.1 Gene:Rpt3 / 32047 FlyBaseID:FBgn0028686 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_001093979.1 Gene:Psmc6 / 289990 RGDID:1308825 Length:403 Species:Rattus norvegicus


Alignment Length:416 Identity:166/416 - (39%)
Similarity:250/416 - (60%) Gaps:26/416 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPYNMDVLI---PEKDELSDLKLKDAHSSLDELDMEDLYVRYKKLQKTLEFIEVQEEYIKDEQRN 62
            :||...:||   |....|.|.:.|       .|:.:::..|.|:|::.|              :.
  Rat     6 IPYERRLLIMADPRDKALQDYRKK-------LLEHKEIDGRLKELREQL--------------KE 49

  Fly    63 LKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVAL 127
            |.|:|..::.::|.:|||..::|:.|:.:.:...||.:|.|..|.|.....:|:..|||...|||
  Rat    50 LTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVAL 114

  Fly   128 HKHSNALVDVLPPEADSSISMLQPDEKPDVSYADIGGMDMQKQEIREAVELPLTHFELYKQIGID 192
            ...:..::..||.|.|..:..:..::..:|||::|||:..|.:|:||.:|||||:.||::::||.
  Rat   115 DMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGII 179

  Fly   193 PPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAII 257
            ||:|.|:|||||.|||:||:|||.....:|::||.|..|.||:||..|::|::|..|:::.|.||
  Rat   180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCII 244

  Fly   258 FIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRL 322
            |:||||||..:||...|.||||:||.|:||||||||||....||:||||||.|||||||||||||
  Rat   245 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRL 309

  Fly   323 DRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFVARPDKISGADINAICQEAGMHAVRENRY 387
            ||||...||:.:.:..:.......:....::|.|..|...|..:|||:..:|.||||.|:|.:..
  Rat   310 DRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHD 374

  Fly   388 IVLAKDFEKGYKN--NIKKDEQEHEF 411
            .|:.:||.|..:.  :.||.|.:.::
  Rat   375 FVVQEDFMKAVRKVADSKKLESKLDY 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3NP_572686.1 PTZ00454 22..413 CDD:240423 158/392 (40%)
Psmc6NP_001093979.1 PRK03992 19..393 CDD:179699 158/394 (40%)

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