DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3 and Psmc3

DIOPT Version :10

Sequence 1:NP_572686.1 Gene:Rpt3 / 32047 FlyBaseID:FBgn0028686 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_032974.2 Gene:Psmc3 / 19182 MGIID:1098754 Length:442 Species:Mus musculus


Alignment Length:422 Identity:167/422 - (39%)
Similarity:254/422 - (60%) Gaps:28/422 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 EKDELSDLKLKDAHSSLDELDMEDLYVRYKKLQKTLEFIEVQEEYIKDEQRNLKKEYLHAQEEVK 75
            |:|.:.:..||        :..|::..|.:.|...::.::.:...:..|.:.:|.:.....|::|
Mouse    28 EQDGIGEEVLK--------MSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIK 84

  Fly    76 RIQSVPLVIGQFLEAVD-----------------QNTG---IVGSTTGSNYYVRILSTIDRELLK 120
            ..:::|.::...:|.:|                 |..|   ::.::|...|::.::..:|.|.||
Mouse    85 VNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLK 149

  Fly   121 PSASVALHKHSNALVDVLPPEADSSISMLQPDEKPDVSYADIGGMDMQKQEIREAVELPLTHFEL 185
            |...|.::|.|..:::.||.|.||.:..::.||:|...|:||||:|.|.||:.||:.||:.|.|.
Mouse   150 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEK 214

  Fly   186 YKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAK 250
            ::.:||.||:|||||||||.|||:||:|.|..|.|:|:::.|.:.||.::|:|.::|||.|.|||
Mouse   215 FENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAK 279

  Fly   251 ENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 315
            |.||:||||||:|||.|||||::...||||||.:||||||:|||...|.||||.||||.|.||||
Mouse   280 EKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPA 344

  Fly   316 LLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFVARPDKISGADINAICQEAGMH 380
            |||.||||||||||:|:...:..:....:.|||:|.||:.||.....|..:||...|:|.||||.
Mouse   345 LLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMI 409

  Fly   381 AVRENRYIVLAKDFEKGYKNNIKKDEQEHEFY 412
            |:|.....:..:|:.:|......|.:...::|
Mouse   410 ALRRGATELTHEDYMEGILEVQAKKKANLQYY 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3NP_572686.1 PTZ00454 22..413 CDD:240423 163/411 (40%)
Psmc3NP_032974.2 PRK03992 42..435 CDD:179699 162/392 (41%)

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