DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt3 and Psmc2

DIOPT Version :10

Sequence 1:NP_572686.1 Gene:Rpt3 / 32047 FlyBaseID:FBgn0028686 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_035318.2 Gene:Psmc2 / 19181 MGIID:109555 Length:433 Species:Mus musculus


Alignment Length:416 Identity:163/416 - (39%)
Similarity:229/416 - (55%) Gaps:66/416 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 EYIKDEQRNLKKEY-----LHAQEE--------------VKRIQSVPLVIGQFLEAVDQNTGIVG 99
            :|:..:||..|:|.     :.|.:|              .::|:.|...|.|.|:.:::.|||..
Mouse     3 DYLGADQRKTKEEEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKE 67

  Fly   100 STTG--------------------SNYYVRILSTIDRELLKPSASVALHKHSNALVDV------- 137
            |.||                    .....|....|:.:...|...:.:.:.:..:||:       
Mouse    68 SDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPT 132

  Fly   138 --------------------LPPEADSSISMLQPDEKPDVSYADIGGMDMQKQEIREAVELPLTH 182
                                |||:.|.:::|:|.:|||||:|:|:||...|.:::||.||.||.|
Mouse   133 DIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLH 197

  Fly   183 FELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFR 247
            .|.:..:||:||:|||::||||.|||:.|:|||:.|.|.||||:|||.||||:|||.||||::|.
Mouse   198 PERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFE 262

  Fly   248 LAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 312
            :|:.....:||.||||||...|||...|.|.||||.:|||:||:||||...|:||:|||||.|||
Mouse   263 MARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

  Fly   313 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFVARPDKISGADINAICQEA 377
            ||||:|||||||||||.|||...:..:|......|::..|:..|.........:||:|.::|.||
Mouse   328 DPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEA 392

  Fly   378 GMHAVRENRYIVLAKDFEKGYKNNIK 403
            ||.|:|..|.|...|||.:.....||
Mouse   393 GMFAIRARRKIATEKDFLEAVNKVIK 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt3NP_572686.1 PTZ00454 22..413 CDD:240423 163/416 (39%)
Psmc2NP_035318.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21 5/17 (29%)
PRK03992 44..430 CDD:179699 156/375 (42%)

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