DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsp60A and CCT4

DIOPT Version :9

Sequence 1:NP_511115.2 Gene:Hsp60A / 32045 FlyBaseID:FBgn0015245 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_609579.1 Gene:CCT4 / 34674 FlyBaseID:FBgn0032444 Length:533 Species:Drosophila melanogaster


Alignment Length:560 Identity:121/560 - (21%)
Similarity:240/560 - (42%) Gaps:86/560 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 KDVRFGPEVRAMMLQGVDVLADAVAVTMGPKGRNVIIEQSWGSPKITKDGVTVAKSIELKDKFQN 88
            ||.....:||...:|....::||:..::||:|.:.:|:...|...||.||.|:.|.:.:    .:
  Fly    18 KDKSKPTDVRLSNIQAAKAVSDAIRTSLGPRGMDKMIQAGNGEVSITNDGATILKQMNV----LH 78

  Fly    89 IGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPVEIRRGVMLAVETVKDNLKT 153
            ..||::.:::...:..||||||:..|:|.|:.:...:.:.||.:|..|............:.||.
  Fly    79 PAAKMLVELSRAQDVAAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILKQ 143

  Fly   154 MSRPVSTP--EEIAQVATISANG------DQAIGNLISEAMKKV---GRDGVITVKDGKTLT--- 204
            ||.|:...  |.:.:.|:.|.|.      ...:..:..:|:.||   |::..:.:|:.|.::   
  Fly   144 MSTPIELDDRETLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVTDPGKETSVDLKNIKVISSLG 208

  Fly   205 ---DELEVIEGMKF---DRGYISPYFINSSKGAKVEFQDALLLLSEKKISSVQSII----PALE- 258
               ::.|:::|:.|   ..|..:|..|..:|...::|     .:|..|.....::|    .|:: 
  Fly   209 GTVEDTELVDGLVFTCRSAGSNAPKRIEKAKIGLIQF-----CISAPKTDMDHNVIVSDYAAMDR 268

  Fly   259 LANAQRKPLVIIAEDIDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKSTLTDMAIASGGIVFGD 323
            :...:|..::.|.:.|.....:.|:|                    :||.|.| |::.....|.|
  Fly   269 VLKEERSYILNIVKQIKKSGCNVLLV--------------------QKSILRD-AVSDLAQHFLD 312

  Fly   324 DADLVKLEDVKVSDLGQVGEVV----ITKDDTLLLKGKGKKDDVLRRANQIKDQIEDTTSEYEKE 384
            ....:.::||:..|:..|.:.:    |...|....:.....|        :.:::...|:::.|.
  Fly   313 KIKCMVVKDVEREDIEFVCKTLHCRPIASLDHFTAENLSSAD--------LVEEVASGTNKFVKI 369

  Fly   385 KLQERLARLASGVALLRVGGSSEVEVNEKKDRVHDALNATRAAVE-EGIVPGGGTALLRCIEKLE 448
            ...:.:.|..|.:.    .||:::.:.|....:||||...|..|: ...:.|||...:....:|.
  Fly   370 TGIQNMGRTVSIIC----RGSNKLVLEEAARSLHDALCVVRCLVKLRAQIVGGGAPEIEMALQLA 430

  Fly   449 GVETTNEDQKLGVE-----IVRRALRMPCMTIAKNAGVDGAMVVAKVENQAG----DYGYDALKG 504
            .:..|.|    ||:     ....||.:...|:|:|||::....|.::.|:..    :.|.:..||
  Fly   431 ALAQTVE----GVDAYCFRAFADALEVIPSTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKG 491

  Fly   505 EYGNLIEKGIIDPTKVVRTAITDAS-GVASLLTTAEAVVT 543
            ...::..:.::.|..|..::||.|: .:.|:|...:.|.|
  Fly   492 AITDIFAENVVQPLLVSISSITLATETIRSILKIDDIVNT 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsp60ANP_511115.2 PTZ00114 12..549 CDD:185455 121/560 (22%)
GroEL 24..544 CDD:239460 121/560 (22%)
CCT4NP_609579.1 TCP1_delta 18..531 CDD:239454 120/558 (22%)
Cpn60_TCP1 37..529 CDD:278544 114/537 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453410
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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