DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sev and scd-2

DIOPT Version :9

Sequence 1:NP_511114.2 Gene:sev / 32039 FlyBaseID:FBgn0003366 Length:2554 Species:Drosophila melanogaster
Sequence 2:NP_504685.3 Gene:scd-2 / 179054 WormBaseID:WBGene00004740 Length:1421 Species:Caenorhabditis elegans


Alignment Length:1148 Identity:260/1148 - (22%)
Similarity:416/1148 - (36%) Gaps:352/1148 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1557 NLTDGSE--LEWATVQPL-----IRLHAGSLE-PGSETLNLVDNQGKLCVYDVARQLCT--ASAL 1611
            |:||..|  .|..||.||     :.||...|: |.::....:...|.:.|:|......|  .|||
 Worm   362 NVTDYHERLSEPTTVAPLNKLNEVPLHLFRLQSPSAKIKEAMRGSGNMLVFDHKPNPLTRRTSAL 426

  Fly  1612 RAQLNLLGEDSIAGQLAQDSGYLY-----AVKNWSIRAY-GRRRQQLEYTVELEPEEVRLLQAHN 1670
                       ::.:|.:.:...|     ..|:..:|.| ..|.....:.:.:..:.:..:::..
 Worm   427 -----------VSPELPRTNPEAYDEKSPLFKSCKLRFYLCSRTYSKVWQISVISKGINPMESGR 480

  Fly  1671 YQAYPPKNCLLLPSSGGSLLKATDCEEQRCLLHLPMITASEDCPLPIPGVRYQLNLTLAKEPGSE 1735
            ...|         .:|.:|:...:|..:|..:::|...|         |.|..:.:| ...||||
 Worm   481 TIIY---------EAGYTLIPKENCTWERVFVNIPRQNA---------GFRIGIFVT-NYFPGSE 526

  Fly  1736 EHDHGMEPLGQWLLGAGESLNLTDLLPFTRYRVSGILSSFYQKKLALPTLVLAPLELLTASATP- 1799
            |:                  ...|.|.|:        .:.:::.:...|..:..|.:.|..|:. 
 Worm   527 EY------------------VAIDNLSFS--------PTCFERDINQSTWDIPDLFINTCGASGF 565

  Fly  1800 SPPRNFSVRVLSPRELEVSWLPPEQLRSESVYYTLHWQQELDGENVQDRREWEAHERRLETAGTH 1864
            ..|:|..                            | .:||||:.....:|....:..:...|.:
 Worm   566 EQPQNCD----------------------------H-NRELDGQTGHFLKEDGTQQWTVPVTGFY 601

  Fly  1865 R--LTGIKPGS--------GYSLWVQAHATPTKSNSSERLHVRSFAELP-------ELQLLELGP 1912
            |  :.|...||        |..:.:|.|..   .|.|.|:.:....|.|       ||:......
 Worm   602 RMEICGAGGGSNSKASGDTGDCVTLQVHLI---ENLSLRMLIGQMGESPCFTEHDDELRPSSCSK 663

  Fly  1913 YSLSLTWAGTPDPLGS----LQLECRSSAEQLRRNVAG--------------------------- 1946
            .|.:..:.|.....|.    |.:|     :.|...|||                           
 Worm   664 ISHNYVYDGKRGAAGGGATLLTVE-----KDLWNVVAGGGAGASWDGFDMEVGYGASAIHVKPDQ 723

  Fly  1947 ---------NHTKMVVEPLQPRTRYQCRLLLGYAATPGAPLYHGTAEVYETLGDAPSQPGKPQLE 2002
                     :||..:||    |...:|         ||.   .|.:.|:...|...:..|     
 Worm   724 RCNETCKAVSHTDFIVE----RRDNRC---------PGE---KGESTVFGGFGGGGNSCG----- 767

  Fly  2003 HIAEEVFRVTWTAARGNGAPIALYNLEALQARSDIRRRRRRRRRNSGGSLEQLPWAEEPVVVEDQ 2067
                        ...|:||        ..||.:...:.|.|    ||.|...:.:::.|:..:.:
 Worm   768 ------------MLGGSGA--------GYQAGNPFGKSRAR----SGSSNVSIDFSKSPIYYQSE 808

  Fly  2068 WLD-------FCNTTELSCIVKSLHSSRLLLFRVRARSLEHGWGP----YSEESERVAEPFVSPE 2121
            .||       ||.        |......:..||......|:...|    .::..|..|.|.|.|.
 Worm   809 RLDEGYIKIAFCR--------KRCEPPTVCRFRKDYFEEEYCGCPDGSNVTDTEEACAFPLVCPS 865

  Fly  2122 KRG-------------------------------------SLVLAIIAPAAIVSSCVLALVLVRK 2149
            ...                                     ::...|.|...|:.    ||.:|..
 Worm   866 SSTNQYRNFTYEPFCLCNNGKEIYDVYNDTCEEIQIWTLYNITFLIFAALTIIG----ALFVVYH 926

  Fly  2150 VQKRRLRAKK----LLQQSRPS-IWSNLSTLQTQQQLMAVRNRAFSTTLSDADIALLPQINWSQL 2209
            .:.|..:.|:    |.|...|. ::.::               .|..|...|.:..||.|:...:
 Worm   927 YRNREKQMKQEILDLTQMKSPDYLYDDI---------------YFGRTTRKAALDSLPSISRDSI 976

  Fly  2210 KLLRFLGSGAFGEVYEGQLKTEDSEEPQRVAIKSLRK--GASEF--AELLQEAQLMSNFKHENIV 2270
            :..|.||.|.|||||.|:.      ...::|:|.:.:  .||:.  ::...||..|..|..||:|
 Worm   977 ERGRVLGRGNFGEVYYGEY------SGVKLAVKMISRTFSASQASQSDFCNEALCMGTFVDENVV 1035

  Fly  2271 CLVGICFDTESISLIMEHMEAGDLLSYLRAARATSTQEPQPTAGLSLSELLAMCIDVANGCSYLE 2335
            .|:||.|:.....:.:|:||.|||||:::..|  ..|.......|::|:|:.:|.|||.||..||
 Worm  1036 RLIGIDFEKVPYMIALEYMEGGDLLSFVKECR--PNQVSLNPFQLAMSDLIKICCDVAAGCKCLE 1098

  Fly  2336 DMHFVHRDLACRNCLVTESTGSTDRRRTVKIGDFGLARDI-YKSDYYRKEGEGLLPVRWMSPESL 2399
            ...:||||:|.||.|:|    :...:|..||.|||:|::| |.::|||..|..::|::|..||:.
 Worm  1099 TFGYVHRDIAARNILLT----TRGPQRVAKIADFGMAKEITYGTEYYRINGRTMMPIKWTPPEAF 1159

  Fly  2400 VDGLFTTQSDVWAFGVLCWEILTLGQQPYAARNNFEVLAHVKEGGRLQQPPMCTEKLYSLLLLCW 2464
            :||:|||:||:|:|||||||:.:||..||..|.|.||:..:.||.||:.|.....::|.|:..||
 Worm  1160 IDGVFTTKSDIWSFGVLCWEVFSLGVVPYPNRRNEEVMLMLTEGARLEYPYGIPTRVYQLMRDCW 1224

  Fly  2465 RTDPWERPSF---------------------------RRCYNTLHAISTDLR-RTQMASAT---- 2497
            :|...:||.|                           |..:  .|:.||.:. .|.|.:.|    
 Worm  1225 KTAAADRPKFVDVVEIFQDIQDDPASVGMPFPIHPAVRATF--AHSQSTPVSVETPMTAMTEISL 1287

  Fly  2498 ------ADTVVSCSRPEFKVRFDGQPLEEHREHNERPEDENLT 2534
                  |.||...::.:.:.|.....|...|||   |....||
 Worm  1288 NSTFTDASTVKVSAQQDMQDRIQLHELMLTREH---PYTSELT 1327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sevNP_511114.2 fn3 439..520 CDD:278470
FN3 826..921 CDD:238020
LY 993..1026 CDD:214531
FN3 1292..1374 CDD:214495
FN3 1799..1897 CDD:238020 19/108 (18%)
FN3 1993..2111 CDD:238020 21/128 (16%)
Pkinase_Tyr 2209..2481 CDD:285015 109/303 (36%)
PTKc_c-ros 2213..2483 CDD:270640 109/301 (36%)
scd-2NP_504685.3 LDLa 305..338 CDD:238060
Gly_rich 590..805 CDD:289573 47/267 (18%)
PKc_like 969..1239 CDD:304357 110/281 (39%)
TyrKc 976..1241 CDD:197581 108/276 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1095
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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