DRSC/TRiP Functional Genomics Resources

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Protein Alignment sev and ret

DIOPT Version :10

Sequence 1:NP_511114.2 Gene:sev / 32039 FlyBaseID:FBgn0003366 Length:2554 Species:Drosophila melanogaster
Sequence 2:XP_012822323.2 Gene:ret / 100495902 XenbaseID:XB-GENE-485176 Length:1102 Species:Xenopus tropicalis


Alignment Length:453 Identity:137/453 - (30%)
Similarity:209/453 - (46%) Gaps:100/453 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly  2135 AIVSSCVLALVLVRKVQKRRLRAKKLLQQSRPSIWSNLSTLQTQQQLMAV---RNRAFSTTLS-- 2194
            :.:.|.:|:...:.:..|         ...:|.|.|...|.:...|...|   .|.|...:|.  
 Frog   633 SFIISVLLSSYFIHRYHK---------NSPKPPIASAEMTFRRPAQSYPVSYSSNNARRPSLDSM 688

  Fly  2195 ----DADIALLPQ-INW----SQLKLLRFLGSGAFGEVYEG-QLKTEDSEEPQRVAIKSLRKGA- 2248
                ..|...:|: ..|    ..|.|.:.||.|.||:|.:. ..:.:.......||:|.|::.| 
 Frog   689 ENQVSVDTFKIPEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFRLKGKAGYTTVAVKMLKESAS 753

  Fly  2249 -SEFAELLQEAQLMSNFKHENIVCLVGICFDTESISLIMEHMEAGDLLSYLRAARATSTQEPQPT 2312
             ||..:||.|..|:....|.:::.|.|.|.....:.||:|:.:.|.|.|:||.:|...   |...
 Frog   754 QSELRDLLSEFNLLKQVNHPHVIKLYGACTQDGPLHLIVEYAKYGSLRSFLRESRKVG---PSSL 815

  Fly  2313 AG----------------LSLSELLAMCIDVANGCSYLEDMHFVHRDLACRNCLVTESTGSTDRR 2361
            .|                |::.:|::....::.|..||.:|..||||||.||.||.|.       
 Frog   816 GGDSNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEG------- 873

  Fly  2362 RTVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMSPESLVDGLFTTQSDVWAFGVLCWEILTLGQQ 2426
            |.:||.||||:||:|:.|.|.|..:|.:||:||:.|||.|.::|||||||:||||.|||:|||..
 Frog   874 RKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGN 938

  Fly  2427 PY---AARNNFEVLAHVKEGGRLQQPPMCTEKLYSLLLLCWRTDPWERPSFRRCYNTLHAISTDL 2488
            ||   |....|.:|   |.|.|:::|..|::::|:|:|.||:.:|.:||:|..       ||.:|
 Frog   939 PYPGIAPERLFNLL---KTGYRMEKPENCSDEMYNLMLKCWKQEPDKRPTFGE-------ISKEL 993

  Fly  2489 RRTQM---------ASATADTVVSCSRPEFKVRFDGQPLEEHREHNERPEDENLTLREVPLKD 2542
            .:..:         ||..||:::                          .|:.|:..|.||.|
 Frog   994 EKMMVKSRDYLDLAASTPADSLL--------------------------YDDGLSEEETPLVD 1030

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sevNP_511114.2 fn3 439..520 CDD:394996
FN3 826..921 CDD:238020
Vgb 992..>1118 CDD:443399
LY 993..1026 CDD:214531
FN3 1292..1374 CDD:214495
fn3 1800..1891 CDD:394996
FN3 1993..2111 CDD:238020
PTKc_c-ros 2213..2483 CDD:270640 107/291 (37%)
retXP_012822323.2 RET_CLD1 20..140 CDD:465485
CA_like 160..242 CDD:481204
RET_CLD3 252..368 CDD:465516
RET_CLD4 392..494 CDD:465517
PTKc_RET 711..1000 CDD:173631 112/308 (36%)
Blue background indicates that the domain is not in the aligned region.

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