DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-4 and Smyd4-2

DIOPT Version :9

Sequence 1:NP_572675.1 Gene:SmydA-4 / 32034 FlyBaseID:FBgn0030257 Length:532 Species:Drosophila melanogaster
Sequence 2:NP_648574.1 Gene:Smyd4-2 / 39414 FlyBaseID:FBgn0036282 Length:663 Species:Drosophila melanogaster


Alignment Length:395 Identity:90/395 - (22%)
Similarity:144/395 - (36%) Gaps:120/395 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 KDKQEQQDKEQSP--SPTEEKEL-----PYRVEHSDIYGRYLVANRQLEAGETLIREEPLAIGPC 84
            |.|.::...||.|  :..|..||     ..|:..:...||::|||..|..|:.|:.|||:|  .|
  Fly   227 KPKPKEATSEQVPQLAHGESAELVGASKVVRLVETKDKGRFVVANEGLRTGDVLLFEEPVA--AC 289

  Fly    85 VSGDPVCLG--CYH-------PVSLKADQYRCPGCAWPLCGSTCAG----LKHRHGHTETECQLY 136
            :  :|...|  |:|       |||.    ..|.|.|:  |.:.|.|    ..||.     ||: |
  Fly   290 L--EPSYFGTHCHHCFKRLHTPVSC----LHCSGIAF--CSAQCMGEACSSYHRF-----ECE-Y 340

  Fly   137 AERRAVAGELLTERAGPAEVRDLYELVMIVRILLLRQHDPEQFALIARMESHTEERRQNAVLWR- 200
            .:....:|         ..:.....|.:..:...|.|.......|...:.||.|:|:.:..|.| 
  Fly   341 MDLMIGSG---------MSILCFIALRIFTQAPSLEQGLATANLLFEHLCSHEEDRQPDDYLRRA 396

  Fly   201 --------------HYEEKVVQRLRVTWQLEDLEAEQVHEVCGILDV---NCFEIGQ-------- 240
                          ::..:..:.:..|    .:|.:....:.|:|.|   |..:|.|        
  Fly   397 LMSGFLLRILQKSLYFGRRKTEGVNPT----AVELQVATALLGLLQVLQYNAHQIYQTQVTEEHR 457

  Fly   241 -NGAK----ARTLYPSAFLLAHDCTPNTAHTDDPSSF---EILLRTSRRVREREALTLSYA-YTL 296
             :|:|    |..||.:.....|:|.|:||     ..|   :::|..:|..|..|.:.::|. ..:
  Fly   458 FDGSKTVYLAAGLYGTGSYFNHECWPSTA-----CHFVGKKLVLTATRPHRANELVAVNYGPIFI 517

  Fly   297 QGTLKRRAFMHEGKL------------------------FWCCCRRCSD----PRELGTDCSALV 333
            :..||.|.....|:.                        |||....||:    |::|..|   :.
  Fly   518 KNNLKERQRSLRGRYSFSCSCMACQENWPLLQKLDKQVRFWCTSANCSNLLKFPKDLAKD---VR 579

  Fly   334 CATCR 338
            |..||
  Fly   580 CPRCR 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-4NP_572675.1 None
Smyd4-2NP_648574.1 TPR_11 142..205 CDD:290150
zf-MYND 299..338 CDD:280009 13/49 (27%)
SET <474..513 CDD:279228 10/43 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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