DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-4 and SmydA-3

DIOPT Version :9

Sequence 1:NP_572675.1 Gene:SmydA-4 / 32034 FlyBaseID:FBgn0030257 Length:532 Species:Drosophila melanogaster
Sequence 2:NP_001260366.1 Gene:SmydA-3 / 34502 FlyBaseID:FBgn0262599 Length:507 Species:Drosophila melanogaster


Alignment Length:491 Identity:163/491 - (33%)
Similarity:256/491 - (52%) Gaps:20/491 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 VEHSDIYGRYLVANRQLEAGETLIREEPLAIGPCVSGDPVCLGCYHPVSLKADQYRCPGCAWPLC 115
            |:.|.:.||||||...:.....||.|.|.|:||..:|..||||||.| :...::..|..|.||||
  Fly    14 VQWSPVCGRYLVAKGAIRGHGLLIEELPFAVGPKCNGPVVCLGCYEP-NPDPEEELCSECGWPLC 77

  Fly   116 GSTCAGLKHRHGHTETECQLYAERRAVAGELLTERAGPAEVRDLYEL--VMIVRILLLRQHDPEQ 178
             ..|| .:..:.|...||....:.||....|      |:..|...:|  :|.:|:||.::.:||:
  Fly    78 -VECA-QQADNAHFRLECSQLKDARARFFRL------PSGSRHCPQLDCIMPLRVLLAKEANPER 134

  Fly   179 F-ALIARMESHTEERRQNAVLWRHYEEKVVQRLRVTWQLEDLEAEQ-VHEVCGILDVNCFEI-GQ 240
            : ..:|.||.|.|||:::|.:|......:.|.||...||.:..:|: :.:|.|:|:||.||. ..
  Fly   135 WDNEVAPMEHHKEERQRDADVWHADRVNIAQYLRGPCQLANRFSEELIMQVVGVLEVNAFEARSP 199

  Fly   241 NGAKARTLYPSAFLLAHDCTPNTAHTDDPS-SFEILLRTSRRVREREALTLSYAYTLQGTLKRRA 304
            .|...|.|:|...:|||:|.|||:.:..|| .::|.||....:.|.:.|..||.|||.||.:|:.
  Fly   200 KGYPLRCLFPYTGILAHNCVPNTSRSIYPSEGYKIRLRAMVDLEEGQPLHHSYTYTLDGTAQRQK 264

  Fly   305 FMHEGKLFWCCCRRCSDPRELGTDCSALVCATCRTGSVRAVDPLQQTGDWACDRCAHKMGATEVE 369
            .:.:||.|.|.|.||.||.||||..|:|.|..|..|......|.:....|.|..|.......:..
  Fly   265 HLKQGKFFTCQCERCLDPTELGTHFSSLKCGQCAEGFQVPRQPTEPDTSWNCANCGSDTSNADAL 329

  Fly   370 RQLDRINNDLEDID-----VHDIPGLENFLLRYRDVLRPNHYLLLSAKYSLCQIYGRTEGYLLPQ 429
            ..|..:.:::..:.     ...:..:|..|.:|:.:|.|.|::....:..|.::|||.:||.:.|
  Fly   330 AMLQSLQSEVNAVQALPMAAKRLEEIERLLRKYKSLLHPLHFIATGLRQLLIEMYGRVQGYEMVQ 394

  Fly   430 MSPEDIARKESYCREFLEIVDVLDPGLTRLRGLIMYELHAPVMVLAQSAFQSGQISRQEFQRRLK 494
            :....:.||...||:.|.:::..:|||:|.|.:.:||||.|:::||:|.|.:|::...|.:.||.
  Fly   395 LPDHQLERKAELCRQVLRVLNTFEPGLSRTRAMNLYELHVPLVLLAKSGFIAGKLKGGELRARLV 459

  Fly   495 EVVKLLQVSRDILLMEPEGSTENAMGQAAADALSKM 530
            :.:.||:...:||..|.:.|.|..:...|..||.::
  Fly   460 DAIDLLKECVEILEFEDKSSQEGVLCVVAKQALKQL 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-4NP_572675.1 None
SmydA-3NP_001260366.1 SET <207..252 CDD:250181 16/44 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 77 1.000 Inparanoid score I1875
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D199835at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR46455
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2203
65.970

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