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Protein Alignment SmydA-4 and Smyd2

DIOPT Version :9

Sequence 1:	NP_572675.1	Gene:	SmydA-4 / 32034	FlyBaseID:	FBgn0030257	Length:	532	Species:	Drosophila melanogaster
Sequence 2:	NP_996733.1	Gene:	Smyd2 / 289372	RGDID:	727785	Length:	433	Species:	Rattus norvegicus

Alignment Length:	498	Identity:	91/498 - (18%)
Similarity:	162/498 - (32%)	Gaps:	152/498 - (30%)

- Green bases have known domain annotations that are detailed below.

  Fly    58 GRYLVANRQLEAGETLIREEPLAIGPCVSGDPVCLGCYHPVSLKADQYRCPGCAWPLCGSTCAGL 122
            ||.|.|.|....|:.|......|   ||            :::....:.|..|.....|.:..|.
  Rat    18 GRGLRALRPFHVGDLLFSCPAYA---CV------------LTVGERGHHCECCFARKEGLSKCGR 67

  Fly   123 KHRHGHTETECQ--------LYAERRAVAGELLTERAGPAE-VRDLYELVMIVRILLLRQHDP-- 176
            ..:..:.:.|||        |......|.|    |...|:| ||      :..|||..::..|
  Rat    68 CKQAFYCDVECQKEDWPLHKLECSSMVVFG----ENWNPSETVR------LTARILAKQKMHPER 122

  Fly   177 ---EQFALIARMESHTEE---------RRQNAVLWRHYEEKVVQRLRVTWQLEDLEAEQVHEVCG 229
               |:...:...|||.::         :...|.|.:.|.:.:        :..|      |....
  Rat   123 TPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKHL--------EFPD------HSSLV 173

  Fly   230 IL--DVNC-------FEIGQNGAKARTLYPSAFLLAHDCTPNTAHTDDPSSFEILLRTSRRVRER 285
            :|  .|||       .|:...|:   .::|...|:.|.|.||...|...:..|:  |..:.:...
  Rat   174 VLFAQVNCNGFTIEDEELSHLGS---AIFPDVALMNHSCCPNVIVTYKGTLAEV--RAVQEIHPG 233

  Fly   286 EALTLSYAYTLQGTLKRRAFMHEGKLFWCCCRRCSDPRELGTDCSALVCATCRTGSVRAVDPLQQ 350
            :.:..||...|..|..|...:.:...|.|.||.|:
  Rat   234 DEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECT------------------------------ 268

  Fly   351 TGDWACDRCAHKMGATEVERQLDRINNDLEDIDVHDIPGLENFLLRY-RDVL----RPNHYLLLS 410
            |.|           ..:.:.::.:::|..:...:.|       ::|| |:|:    |..||...|
  Rat   269 TKD-----------KDKAKVEIRKLSNPPQAEAIRD-------MVRYARNVIEEFRRAKHYKSPS 315

  Fly   411 AKYSLCQ--------IYGRTEGYLLPQMSPEDIARKESYCREFLEIVDVLDPGLTRLRGLIMYEL 467
            ....:|:        ::..:..|:|..|     .:....|....:....|..|...::   .|..
  Rat   316 ELLEICELSQEKMSSVFEDSNVYMLHMM-----YQAMGVCLYMQDWEGALKYGQKIIK---PYSK 372

  Fly   468 HAPV-------MVLAQSAFQSGQISRQEFQRRLKEVVKLLQVS 503
            |.||       |.|.......|..::...::.||:.:.:::::
  Rat   373 HYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEIA 415

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.