DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-4 and set-10

DIOPT Version :9

Sequence 1:NP_572675.1 Gene:SmydA-4 / 32034 FlyBaseID:FBgn0030257 Length:532 Species:Drosophila melanogaster
Sequence 2:NP_493620.2 Gene:set-10 / 185237 WormBaseID:WBGene00009370 Length:430 Species:Caenorhabditis elegans


Alignment Length:476 Identity:107/476 - (22%)
Similarity:175/476 - (36%) Gaps:113/476 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 TLIREEPLA--IGPCVSGDPVCLGCYHPV--SLKADQYRCPGC-AWPLCGSTCAGLKHRHGHTET 131
            |:.||:|||  :.|..| :..|..|:..:  |.:.:...|..| |...|...|.....:..| :.
 Worm     3 TVAREQPLAAVLSPQFS-ELYCATCFLEIDSSQETEILTCDDCLAVSYCTLKCQRKDWKSCH-QF 65

  Fly   132 ECQLYAERRAVAGELLTERAGPAEVRDLYELVMIVRILLL-RQHDPEQF--ALIARMESHTEERR 193
            ||::...:.:.....||             :.:.:|:||. |......|  |::..:|::.:|.|
 Worm    66 ECEILRCQGSSTPMTLT-------------MKLCIRVLLASRSTQTPSFNGAVLEDLETNYKEFR 117

  Fly   194 QNAVLWRH--YEEKVVQRLRVTWQ---LEDLEAEQ-VHEVCGILDVNCFE---------IGQNGA 243
            .:.   .|  :...|:..:..:.|   ...||..: :..:|.:| .|.|.         ||..  
 Worm   118 SSP---EHNQFLSDVLTIISSSGQNIFPTSLETNKTIGIICSVL-CNSFSIINEKRVEPIGSG-- 176

  Fly   244 KARTLYPSAFLLAHDCTPNTAHTDDPSSFE---ILLRTSRRVREREALTLSYAYTLQGTLKRRAF 305
                ||.......|.|. :|:|.    .||   :.|||::....:| ||:||...:..|.:||..
 Worm   177 ----LYVGVAKHNHSCA-STSHV----VFEGNQVFLRTNQEEYSKE-LTISYVSRMLPTSERRKT 231

  Fly   306 MHEGKLFWCCCRRCS----DPRELGTDCSALVCATCRTGSVRAVDPLQQTGDWACDRCAHKMGAT 366
            :.......|.|..|.    |...|.:.|....|    ||.|:        |...|..| .|:...
 Worm   232 IRGVHFLTCQCEMCKNEELDLIGLSSKCRTKNC----TGFVK--------GSGNCSVC-EKLAFL 283

  Fly   367 EVERQLDRINNDLEDID----------VHDIPGLENFLLRYRDVLRPNHYLLLSAKYSLCQIYGR 421
            ..|:.:....|.|:.|:          |.::..|:.....|:|:|...:..:|..          
 Worm   284 PFEQSIHSTLNLLDIIENLHKTNQFTTVQELAYLQKLRADYQDILAECNVAILQL---------- 338

  Fly   422 TEGYLLPQMSPEDIARKESYCREFLEIVDVLDPGLTRLRG----LIMYELHAPVMVLAQSAFQSG 482
                      .|.||    ||...||.|:.||..|...||    :....:.|| .|..:......
 Worm   339 ----------DEQIA----YCSSSLENVNDLDLDLIAGRGSEHFITRLGIGAP-EVTRRLYIGCK 388

  Fly   483 QISRQEFQRRLKEVVKLLQVS 503
            .|||....:|..::|||::::
 Worm   389 CISRISPSKRSVKLVKLIKLA 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-4NP_572675.1 None
set-10NP_493620.2 zf-MYND 23..67 CDD:366792 9/44 (20%)
SET 57..247 CDD:394802 47/219 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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