DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-4 and set-14

DIOPT Version :9

Sequence 1:NP_572675.1 Gene:SmydA-4 / 32034 FlyBaseID:FBgn0030257 Length:532 Species:Drosophila melanogaster
Sequence 2:NP_496323.1 Gene:set-14 / 174662 WormBaseID:WBGene00011068 Length:429 Species:Caenorhabditis elegans


Alignment Length:500 Identity:95/500 - (19%)
Similarity:151/500 - (30%) Gaps:186/500 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 LPYRVEHSDIYGRYLVANRQLEAGETLIREEPLAIGPCVSGDPVCLGCYHPVSLKADQYRCPGCA 111
            ||....|.::|. :.:|..|:|:                    .|..|   ::..|:..:|..|.
 Worm     3 LPPDALHENVYA-FALARDQVES--------------------YCNQC---LTSMAELKKCSACR 43

  Fly   112 -------------WPLCGSTCAGLKHRHGHTETECQLYAERRAVAGELLTERAGPAEVRDLYELV 163
                         |.|....|..:|   .|.|...........:||:|.....|..|.   |.:.
 Worm    44 RLAYCSQECQRADWKLHKVECKAIK---THNEVANDSIRLVMRIAGKLSRNEDGEIEA---YYIP 102

  Fly   164 MIVRILLLRQHDPEQFALIARMESHTEERRQNAVLWRHYEEKVVQRLRVTWQLEDLEAEQVHEVC 228
            .:.|.....:|.|..:.  |..||..:|..|.|:. .|.:..::   ::.:|.            
 Worm   103 GVARNFQNLEHHPSSYD--ADEESFVKEYFQFAIA-PHPDRDLI---KLIFQK------------ 149

  Fly   229 GILDVNCFEIGQNGAKARTLYPSAFLLA-------HDCTPNTAHTDDPSSFEILLRTSRRV--RE 284
              :.:|.|.:|.:     |..|....|.       |.|.|.|                 ||  |.
 Worm   150 --VSINSFVVGNS-----TGNPIGVGLCIKLSAANHSCKPLT-----------------RVCYRN 190

  Fly   285 REALTLSYAYTLQGTLK---------------RRAFMHEGKLFWCCCRRCSDPRELGTDCSALVC 334
            |.|:.:..:..|..||:               ||..:.:...|.|.|..|.| .:......|..|
 Worm   191 RTAMLVPVSSELPSTLEGACHSYIDELMPRDMRRDTLKKKYKFLCQCDGCLD-EDRNARMEAWTC 254

  Fly   335 ATCRTGSVRAVDPLQQTGDWACDRCAHKMG---------ATEV---------------------- 368
            ..|..|.:|.    ::.|.  |:.|...|.         |.|.                      
 Worm   255 GICVKGWMRN----KENGQ--CELCGWTMSKDHFELCRTAEEAGIAARSRLANDAIPLETKRNLC 313

  Fly   369 ERQLDRINNDLEDIDVHDIPGLE-----------------------NFLLRYRDVLRPNHYLLLS 410
            |:.||...:.|.|.:||.||.|.                       :.:|.|::...|   .:|.
 Worm   314 EKLLDLFQDTLHDHNVHRIPVLRCLYICSLAAQNITAAAKTGGTLLSIMLVYQNTTDP---AILF 375

  Fly   411 AKYSLCQIY----GRTEGYLLPQ---------MSPEDIARKESYC 442
            .||.|.|::    .:|:...|.|         .:|:.:..:..||
 Worm   376 QKYQLAQLFCAAGAKTQATKLLQEIEEPLEKIYTPDSMICRNVYC 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-4NP_572675.1 None
set-14NP_496323.1 zf-MYND 26..64 CDD:280009 7/40 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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